miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 5' -58.2 NC_005345.2 + 26362 0.66 0.525616
Target:  5'- ---cGCcGAGGAucgcGCGGAUcccucccgAGGUGACCg -3'
miRNA:   3'- uuguCGcCUCCU----CGCCUG--------UCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 21649 0.66 0.525616
Target:  5'- -uCAGCGGcucGGGCGGGguggGGGUGACUc -3'
miRNA:   3'- uuGUCGCCuc-CUCGCCUg---UCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 9649 0.66 0.525616
Target:  5'- cGACGGCGuGuGGGGCGGGC---UGACg -3'
miRNA:   3'- -UUGUCGC-CuCCUCGCCUGuccACUGg -5'
26255 5' -58.2 NC_005345.2 + 14898 0.66 0.504724
Target:  5'- --aGGCGGAGcAGCGGGCGaagcgGGCCg -3'
miRNA:   3'- uugUCGCCUCcUCGCCUGUcca--CUGG- -5'
26255 5' -58.2 NC_005345.2 + 36345 0.66 0.498526
Target:  5'- -cCGGCGGGccGAGCGGcucgggcgggucguuGCGGGUGGuCCa -3'
miRNA:   3'- uuGUCGCCUc-CUCGCC---------------UGUCCACU-GG- -5'
26255 5' -58.2 NC_005345.2 + 8683 0.66 0.493387
Target:  5'- cGCGGCGGuGGccgugacGUGGGCGGcccggcuGUGGCCg -3'
miRNA:   3'- uUGUCGCCuCCu------CGCCUGUC-------CACUGG- -5'
26255 5' -58.2 NC_005345.2 + 29527 0.66 0.484199
Target:  5'- cGGCAGUGcGAGGaAGUGaucaGGCAGGUGuucCCg -3'
miRNA:   3'- -UUGUCGC-CUCC-UCGC----CUGUCCACu--GG- -5'
26255 5' -58.2 NC_005345.2 + 6817 0.67 0.464082
Target:  5'- uGCGGCGGAcGccauGGCGGGCGGGaucGACa -3'
miRNA:   3'- uUGUCGCCUcC----UCGCCUGUCCa--CUGg -5'
26255 5' -58.2 NC_005345.2 + 35835 0.67 0.464082
Target:  5'- --gGGC-GAGG-GCGcGGCGGGUGGCUc -3'
miRNA:   3'- uugUCGcCUCCuCGC-CUGUCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 35015 0.67 0.44441
Target:  5'- uGCGGCGGccacguGGGGGCGGgACcGGUGGu- -3'
miRNA:   3'- uUGUCGCC------UCCUCGCC-UGuCCACUgg -5'
26255 5' -58.2 NC_005345.2 + 2594 0.67 0.44441
Target:  5'- uGACGGCGaGGGAuaccucaugcgcGCGGACGGaGUcggGGCCg -3'
miRNA:   3'- -UUGUCGCcUCCU------------CGCCUGUC-CA---CUGG- -5'
26255 5' -58.2 NC_005345.2 + 31205 0.67 0.44441
Target:  5'- uGCGGCGGgugcgcacccGGGuGCGGcCGGGUGuACg -3'
miRNA:   3'- uUGUCGCC----------UCCuCGCCuGUCCAC-UGg -5'
26255 5' -58.2 NC_005345.2 + 35100 0.67 0.434751
Target:  5'- cGGCGGUGGuGcGGGCGuGGCGGGUGuuguUCa -3'
miRNA:   3'- -UUGUCGCCuC-CUCGC-CUGUCCACu---GG- -5'
26255 5' -58.2 NC_005345.2 + 3420 0.67 0.434751
Target:  5'- aGGCGGCGGGcgcGGcGGCGGGCGGcGaugcgGGCCc -3'
miRNA:   3'- -UUGUCGCCU---CC-UCGCCUGUC-Ca----CUGG- -5'
26255 5' -58.2 NC_005345.2 + 7359 0.67 0.434751
Target:  5'- cGCGGUGGcGcAGcCGGGCggGGGUGGCCg -3'
miRNA:   3'- uUGUCGCCuCcUC-GCCUG--UCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 38893 0.68 0.388355
Target:  5'- gGACGGCaGAGaucGGCGccCGGGUGACCg -3'
miRNA:   3'- -UUGUCGcCUCc--UCGCcuGUCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 48894 0.68 0.379473
Target:  5'- uGGCGGC-GAGGuGCGGGCGGcGaUGGCUc -3'
miRNA:   3'- -UUGUCGcCUCCuCGCCUGUC-C-ACUGG- -5'
26255 5' -58.2 NC_005345.2 + 15547 0.68 0.370729
Target:  5'- cGCGGCGGAGaacacGGCGGcACcGGcGACCg -3'
miRNA:   3'- uUGUCGCCUCc----UCGCC-UGuCCaCUGG- -5'
26255 5' -58.2 NC_005345.2 + 9889 0.69 0.362123
Target:  5'- cAGCAGCGGGccgaacucGGcGGCGaGCAGGaaUGACCg -3'
miRNA:   3'- -UUGUCGCCU--------CC-UCGCcUGUCC--ACUGG- -5'
26255 5' -58.2 NC_005345.2 + 31322 0.69 0.345331
Target:  5'- cGCGGUcuGGAGG-GCGGcCGGacGUGACCa -3'
miRNA:   3'- uUGUCG--CCUCCuCGCCuGUC--CACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.