miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 37433 0.66 0.68587
Target:  5'- uGGUAcGCggCGGCgGCCCGcugguCGGCCGUCg -3'
miRNA:   3'- gUCAU-CG--GCUG-CGGGCau---GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 283 0.66 0.68587
Target:  5'- ---cGGCCGGCgaauGCUgGUACAACCacGUCa -3'
miRNA:   3'- gucaUCGGCUG----CGGgCAUGUUGG--CAG- -5'
26256 3' -55.7 NC_005345.2 + 44898 0.66 0.68587
Target:  5'- cCGGUGuucGCCGGCaGCCCG---AGCCGUg -3'
miRNA:   3'- -GUCAU---CGGCUG-CGGGCaugUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 40701 0.66 0.674919
Target:  5'- -uGUGGCCGGugcCGUCCGUccacacCGACCGcUCg -3'
miRNA:   3'- guCAUCGGCU---GCGGGCAu-----GUUGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 22624 0.66 0.674919
Target:  5'- gCGGUGGuuCCGGCGCUCGUGCcggguGCaagggGUCg -3'
miRNA:   3'- -GUCAUC--GGCUGCGGGCAUGu----UGg----CAG- -5'
26256 3' -55.7 NC_005345.2 + 39015 0.66 0.671626
Target:  5'- gAGcGGCCGcCGCCUGUaccucggggaugggGCAGUCGUCg -3'
miRNA:   3'- gUCaUCGGCuGCGGGCA--------------UGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37297 0.66 0.663928
Target:  5'- gCAG-GGCCGAUGCCC--AC-GCCGUg -3'
miRNA:   3'- -GUCaUCGGCUGCGGGcaUGuUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 9110 0.66 0.663928
Target:  5'- -uGUGGUCGAgcUGCUCG-ACucuGCCGUCg -3'
miRNA:   3'- guCAUCGGCU--GCGGGCaUGu--UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 46150 0.66 0.663928
Target:  5'- --cUGGCCucGGcCGCCCGUACcGCCGa- -3'
miRNA:   3'- gucAUCGG--CU-GCGGGCAUGuUGGCag -5'
26256 3' -55.7 NC_005345.2 + 30633 0.66 0.663928
Target:  5'- cCGGacGCCGACGCCgCGUACucgcucGACC-UCg -3'
miRNA:   3'- -GUCauCGGCUGCGG-GCAUG------UUGGcAG- -5'
26256 3' -55.7 NC_005345.2 + 21452 0.66 0.662827
Target:  5'- gCAGggcuGCCGugucggcGCGCCCGgucacGCGGCCGg- -3'
miRNA:   3'- -GUCau--CGGC-------UGCGGGCa----UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 26690 0.66 0.652907
Target:  5'- gCGGUaaaGGCCGACGCC---GCGACCa-- -3'
miRNA:   3'- -GUCA---UCGGCUGCGGgcaUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 13467 0.66 0.652907
Target:  5'- aCGGcguGCUGugGCCCG-ACGGCaccgCGUCg -3'
miRNA:   3'- -GUCau-CGGCugCGGGCaUGUUG----GCAG- -5'
26256 3' -55.7 NC_005345.2 + 7137 0.66 0.652907
Target:  5'- cCGGgcggGGCaCGugGCCCGggACGggucggacccGCUGUCg -3'
miRNA:   3'- -GUCa---UCG-GCugCGGGCa-UGU----------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 9820 0.66 0.640762
Target:  5'- cCGGUGccGCCGAUGCCCGauCAGgggugucUCGUCg -3'
miRNA:   3'- -GUCAU--CGGCUGCGGGCauGUU-------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13747 0.66 0.630817
Target:  5'- gCGGU-GCCGAcCGCCCGcAUc-CCGUCc -3'
miRNA:   3'- -GUCAuCGGCU-GCGGGCaUGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 10572 0.66 0.630817
Target:  5'- ---cGGCCGcgaGCGCCaCGUAC-GCCGUg -3'
miRNA:   3'- gucaUCGGC---UGCGG-GCAUGuUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 7946 0.66 0.630817
Target:  5'- aAGUcgAGCCGGCGggcggggauCCCGU-CggUCGUCg -3'
miRNA:   3'- gUCA--UCGGCUGC---------GGGCAuGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37493 0.66 0.630817
Target:  5'- aAGuUGGCCGcuacCGCcgCCGUGCAGgCGUCu -3'
miRNA:   3'- gUC-AUCGGCu---GCG--GGCAUGUUgGCAG- -5'
26256 3' -55.7 NC_005345.2 + 31933 0.66 0.630817
Target:  5'- aCAGUgauGGCCGGCGacaCCG-ACAACCc-- -3'
miRNA:   3'- -GUCA---UCGGCUGCg--GGCaUGUUGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.