miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 22586 0.66 0.928376
Target:  5'- -cUCACUGAAcGAcgcgaugugcucGCGCAccUUCGCCa -3'
miRNA:   3'- caAGUGGCUU-CU------------CGCGUaaAAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 26020 0.66 0.928376
Target:  5'- --gUACCGGacgcgGGAGCGCAccggcgcUCGCCu -3'
miRNA:   3'- caaGUGGCU-----UCUCGCGUaaa----AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 36912 0.66 0.928376
Target:  5'- ---gACCGGGuGAGCGgGUcaUCGCCa -3'
miRNA:   3'- caagUGGCUU-CUCGCgUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 8254 0.66 0.928376
Target:  5'- -gUCGCCGGGuucGAGCGCgggguucacgaGUgcccuuaggUUCGCCGu -3'
miRNA:   3'- caAGUGGCUU---CUCGCG-----------UAa--------AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18026 0.66 0.922314
Target:  5'- --aCGCCGGGcGAGCGCAggaaCGCgGc -3'
miRNA:   3'- caaGUGGCUU-CUCGCGUaaaaGCGgC- -5'
26257 5' -50.3 NC_005345.2 + 13635 0.66 0.922314
Target:  5'- ---aACCGGAcGGCGCGgcgugagCGCCGa -3'
miRNA:   3'- caagUGGCUUcUCGCGUaaaa---GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 33452 0.66 0.922314
Target:  5'- aUUCGCCGAGGAccugcaGCGgCAga-UCgGCCGg -3'
miRNA:   3'- cAAGUGGCUUCU------CGC-GUaaaAG-CGGC- -5'
26257 5' -50.3 NC_005345.2 + 45088 0.66 0.922314
Target:  5'- --gCACCGAGGcauaccgugucGGCGCucgucggCGCCGu -3'
miRNA:   3'- caaGUGGCUUC-----------UCGCGuaaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 25136 0.66 0.922314
Target:  5'- --aCGCCucGgcGAGCGCGaucgCGCCGa -3'
miRNA:   3'- caaGUGG--CuuCUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10049 0.66 0.922314
Target:  5'- -cUCGCCGAGGAcGCGaucggGUUcgaCGCCGu -3'
miRNA:   3'- caAGUGGCUUCU-CGCg----UAAaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 32521 0.66 0.91595
Target:  5'- --gCACCGGAGugacggcGUGCAUgccgaCGCCGa -3'
miRNA:   3'- caaGUGGCUUCu------CGCGUAaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 46305 0.66 0.909284
Target:  5'- cUUCGCCGcccGAGCGCA----CGCUGu -3'
miRNA:   3'- cAAGUGGCuu-CUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 9053 0.66 0.909284
Target:  5'- --aCACCGAGcaGGCGCGg---CGCCa -3'
miRNA:   3'- caaGUGGCUUc-UCGCGUaaaaGCGGc -5'
26257 5' -50.3 NC_005345.2 + 18930 0.66 0.909284
Target:  5'- -cUCACCGccGGAuGCGCGaucgUCGCCc -3'
miRNA:   3'- caAGUGGCu-UCU-CGCGUaaa-AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 10007 0.66 0.908601
Target:  5'- --gCGCCGguGAGCGggagcgacucccaCAggUUCGCCGu -3'
miRNA:   3'- caaGUGGCuuCUCGC-------------GUaaAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17881 0.66 0.90232
Target:  5'- --cCGCCGu--GGCGUAg--UCGCCGa -3'
miRNA:   3'- caaGUGGCuucUCGCGUaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 40284 0.66 0.90232
Target:  5'- ----uCCGGAGAGCGuCAUgccgCGCCc -3'
miRNA:   3'- caaguGGCUUCUCGC-GUAaaa-GCGGc -5'
26257 5' -50.3 NC_005345.2 + 24024 0.66 0.895061
Target:  5'- -cUCGCCGAGGcguGUGCcgauGUggUUGCCGa -3'
miRNA:   3'- caAGUGGCUUCu--CGCG----UAaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19441 0.67 0.887511
Target:  5'- --gCACCGGgcucgggcAGcAGCGCGaucgcgUUCGCCGg -3'
miRNA:   3'- caaGUGGCU--------UC-UCGCGUaa----AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17739 0.67 0.887511
Target:  5'- -aUCGCCG-GGuGCGCAc--UCGCCc -3'
miRNA:   3'- caAGUGGCuUCuCGCGUaaaAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.