miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 33741 0.65 0.626186
Target:  5'- gGCUaCGGCGAGUcgaucgaccaggucAaCGACUCcCuGCGGa -3'
miRNA:   3'- -CGA-GCCGCUCG--------------UaGCUGAGcGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37631 0.66 0.618604
Target:  5'- uGCUCauucGUGAGCGgcugcagucCGGCgUCGguGCGGg -3'
miRNA:   3'- -CGAGc---CGCUCGUa--------GCUG-AGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24391 0.66 0.618604
Target:  5'- aGCUCGGCGgcAGCAucaUCGAgaCGCcgaacGCGu -3'
miRNA:   3'- -CGAGCCGC--UCGU---AGCUgaGCGu----CGCc -5'
26261 3' -57.3 NC_005345.2 + 5208 0.66 0.618604
Target:  5'- gGCaCGGcCGGGCA---GCUCGCGGcCGGc -3'
miRNA:   3'- -CGaGCC-GCUCGUagcUGAGCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 13506 0.66 0.618604
Target:  5'- gGCgCGGCGAGCAcccgUCGA-UCGUGuucugggaccGCGGg -3'
miRNA:   3'- -CGaGCCGCUCGU----AGCUgAGCGU----------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 28758 0.66 0.618604
Target:  5'- --aCGGCGGGgc-CGGCUCGguGaCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCguC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 26055 0.66 0.618604
Target:  5'- cCUCGGCGAGCGcCuGCUCGaacuGGCu- -3'
miRNA:   3'- cGAGCCGCUCGUaGcUGAGCg---UCGcc -5'
26261 3' -57.3 NC_005345.2 + 19796 0.66 0.612109
Target:  5'- gGCUCGGCuacgccgacggcgacGAGCGcUGACaccCGgGGCGGc -3'
miRNA:   3'- -CGAGCCG---------------CUCGUaGCUGa--GCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38706 0.66 0.607782
Target:  5'- uCUCGGUGAGCugCGcaaCGCGGUGGu -3'
miRNA:   3'- cGAGCCGCUCGuaGCugaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 10854 0.66 0.596982
Target:  5'- cGC-CGGCGAGguaguaGUCGACggGCcacugcaaGGCGGg -3'
miRNA:   3'- -CGaGCCGCUCg-----UAGCUGagCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36028 0.66 0.596982
Target:  5'- cGCaCGGCGGGCGUuCGAggugaaagCGCGGCa- -3'
miRNA:   3'- -CGaGCCGCUCGUA-GCUga------GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 35842 0.66 0.596982
Target:  5'- gGCgCGGCGGGUGgcUCGGUUCG-GGCGGg -3'
miRNA:   3'- -CGaGCCGCUCGU--AGCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45712 0.66 0.596982
Target:  5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3'
miRNA:   3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 18509 0.66 0.595903
Target:  5'- aGgUCGaGCGAguacgcgGCGUCGGCgucCGgGGCGGu -3'
miRNA:   3'- -CgAGC-CGCU-------CGUAGCUGa--GCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 7512 0.66 0.58621
Target:  5'- aUUCGGUGGGCGU--GCUgccgGCGGCGGu -3'
miRNA:   3'- cGAGCCGCUCGUAgcUGAg---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22048 0.66 0.58621
Target:  5'- aGCUCa-CGAGC--CGAC-CGCGGUGGg -3'
miRNA:   3'- -CGAGccGCUCGuaGCUGaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 5438 0.66 0.58621
Target:  5'- cUUCGGCGGcGCccggGUCGGC-CGUAGgGGc -3'
miRNA:   3'- cGAGCCGCU-CG----UAGCUGaGCGUCgCC- -5'
26261 3' -57.3 NC_005345.2 + 37233 0.66 0.575475
Target:  5'- -gUCGGCGgcgugccguaguAGCGggCGACg-GCGGCGGu -3'
miRNA:   3'- cgAGCCGC------------UCGUa-GCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11570 0.66 0.575475
Target:  5'- cGCcCGGC-AGC-UCGACgacgggcgccUCGCGGUGGc -3'
miRNA:   3'- -CGaGCCGcUCGuAGCUG----------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 28145 0.67 0.569056
Target:  5'- gGC-CGGCGAacGCGUCGcccggucggcguucCUCGCcGCGGc -3'
miRNA:   3'- -CGaGCCGCU--CGUAGCu-------------GAGCGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.