miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 3' -61.6 NC_005345.2 + 22769 0.66 0.401771
Target:  5'- gGGCAcucggucaccUCGGGAgggauCCGCGCgaucCuCGGCGg -3'
miRNA:   3'- -CCGU----------AGCCCUac---GGCGCGa---GcGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 12296 0.66 0.401771
Target:  5'- cGC-UCGGGAucgagUGCCcCGagugCGCGGCGc -3'
miRNA:   3'- cCGuAGCCCU-----ACGGcGCga--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 1615 0.66 0.401771
Target:  5'- cGCGuUCGGuGAUGagGuCGgUCGCGGCGa -3'
miRNA:   3'- cCGU-AGCC-CUACggC-GCgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 8537 0.66 0.401771
Target:  5'- cGGC-UCGcGGAgagguacaccCCGUGCUCGcCGGCu -3'
miRNA:   3'- -CCGuAGC-CCUac--------GGCGCGAGC-GCCGc -5'
26262 3' -61.6 NC_005345.2 + 36790 0.66 0.401771
Target:  5'- aGGCGUCGGGcc-CCGUGCagccgaUUGCGGa- -3'
miRNA:   3'- -CCGUAGCCCuacGGCGCG------AGCGCCgc -5'
26262 3' -61.6 NC_005345.2 + 27139 0.66 0.401771
Target:  5'- cGGCGggccCGGcAUGCCGC-CgUGCGGCa -3'
miRNA:   3'- -CCGUa---GCCcUACGGCGcGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 1908 0.66 0.401771
Target:  5'- gGGCGUagaUGuGGAUGUCGCcauGCUCGgaagGGCGg -3'
miRNA:   3'- -CCGUA---GC-CCUACGGCG---CGAGCg---CCGC- -5'
26262 3' -61.6 NC_005345.2 + 35938 0.66 0.401771
Target:  5'- gGGCG-CGGGGUgugcucGCCGCGCggGCuGCc -3'
miRNA:   3'- -CCGUaGCCCUA------CGGCGCGagCGcCGc -5'
26262 3' -61.6 NC_005345.2 + 33312 0.66 0.399125
Target:  5'- cGCGagCGGGc--CCGCGCccaucuccacgcggUCGCGGCGu -3'
miRNA:   3'- cCGUa-GCCCuacGGCGCG--------------AGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 36238 0.66 0.392995
Target:  5'- gGGCga-GGGAguagGCgGCcgUCGCGGCGa -3'
miRNA:   3'- -CCGuagCCCUa---CGgCGcgAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 41830 0.66 0.392995
Target:  5'- cGGCAUUGucGAcGCCGuCGCacCGCGGCu -3'
miRNA:   3'- -CCGUAGCc-CUaCGGC-GCGa-GCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 28373 0.66 0.392995
Target:  5'- gGGCggCGGauaccaggGCaCGCGCcgcCGCGGCGg -3'
miRNA:   3'- -CCGuaGCCcua-----CG-GCGCGa--GCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 29331 0.66 0.392124
Target:  5'- cGGCcgCcccGGGUGUCaGCGCUCGUcgccgucGGCGu -3'
miRNA:   3'- -CCGuaGc--CCUACGG-CGCGAGCG-------CCGC- -5'
26262 3' -61.6 NC_005345.2 + 17956 0.66 0.384344
Target:  5'- cGGCGuccgcUCGGccgccUGCCGgGC-CGCGGCc -3'
miRNA:   3'- -CCGU-----AGCCcu---ACGGCgCGaGCGCCGc -5'
26262 3' -61.6 NC_005345.2 + 19446 0.66 0.384344
Target:  5'- gGGC-UCGGGcaGCagcgcgauCGCGUUCGCcGGCGu -3'
miRNA:   3'- -CCGuAGCCCuaCG--------GCGCGAGCG-CCGC- -5'
26262 3' -61.6 NC_005345.2 + 37965 0.66 0.384344
Target:  5'- cGG-AUCGGGAU-CCGgugGCUCgacGCGGCGa -3'
miRNA:   3'- -CCgUAGCCCUAcGGCg--CGAG---CGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 4127 0.66 0.384344
Target:  5'- uGGCGUUc-GA-GCgGCuGCUCGCGGCGc -3'
miRNA:   3'- -CCGUAGccCUaCGgCG-CGAGCGCCGC- -5'
26262 3' -61.6 NC_005345.2 + 43511 0.66 0.384344
Target:  5'- aGGUcgCGGcGAacCCgGCGCUCGCGGa- -3'
miRNA:   3'- -CCGuaGCC-CUacGG-CGCGAGCGCCgc -5'
26262 3' -61.6 NC_005345.2 + 40885 0.66 0.384344
Target:  5'- gGGCAcUCGuGAaccCCGCGCUCGaaccCGGCGa -3'
miRNA:   3'- -CCGU-AGCcCUac-GGCGCGAGC----GCCGC- -5'
26262 3' -61.6 NC_005345.2 + 23618 0.66 0.383486
Target:  5'- cGGCGgacCGGGcacgGCUGCGCaugguguUCGCcgaGGCGg -3'
miRNA:   3'- -CCGUa--GCCCua--CGGCGCG-------AGCG---CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.