miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 41513 0.66 0.559397
Target:  5'- gCCGCACGCCucgauguucugggccGGGUCGGcGaUGUGcUCCGa -3'
miRNA:   3'- -GGUGUGCGGc--------------UCCAGCC-C-GUAC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 31794 0.66 0.558347
Target:  5'- gCACucggguuCGCCGuccGGGUCGGG---GUCCGg -3'
miRNA:   3'- gGUGu------GCGGC---UCCAGCCCguaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 13516 0.66 0.558347
Target:  5'- gCACcCGUCGAucguguucuGGgaccgCGGGCAgcUGUCCGu -3'
miRNA:   3'- gGUGuGCGGCU---------CCa----GCCCGU--ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 36025 0.66 0.558347
Target:  5'- aCAUgauCGCCaAGaUCGGGCA-GUCCGg -3'
miRNA:   3'- gGUGu--GCGGcUCcAGCCCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 24365 0.66 0.547884
Target:  5'- aCCACcuUGCCGAGGUCGGaCGacGcCCGc -3'
miRNA:   3'- -GGUGu-GCGGCUCCAGCCcGUa-CaGGC- -5'
26265 5' -58.7 NC_005345.2 + 16170 0.66 0.547884
Target:  5'- gCCGCcuGCGCCGAGGacuacgCGGacGCGgccggcGUCCGc -3'
miRNA:   3'- -GGUG--UGCGGCUCCa-----GCC--CGUa-----CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18789 0.66 0.547884
Target:  5'- gCCGCGgGCUGccGUCGGGCAggGUgaCGg -3'
miRNA:   3'- -GGUGUgCGGCucCAGCCCGUa-CAg-GC- -5'
26265 5' -58.7 NC_005345.2 + 26931 0.66 0.537483
Target:  5'- gCGCAUgGUCGAGGUCaGGCAgacgaucccGUCCc -3'
miRNA:   3'- gGUGUG-CGGCUCCAGcCCGUa--------CAGGc -5'
26265 5' -58.7 NC_005345.2 + 31451 0.66 0.537483
Target:  5'- uCC-CGuCGCCGAGGcCGGcGCG-GUUCGu -3'
miRNA:   3'- -GGuGU-GCGGCUCCaGCC-CGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 44019 0.66 0.531275
Target:  5'- uCCugAuCGCCG-GGUUcggaaagaccuguugGGGUGUGUCCu -3'
miRNA:   3'- -GGugU-GCGGCuCCAG---------------CCCGUACAGGc -5'
26265 5' -58.7 NC_005345.2 + 9713 0.66 0.527151
Target:  5'- gCACAucaguccguCGCCGGGGUCGaGCggGUCgGc -3'
miRNA:   3'- gGUGU---------GCGGCUCCAGCcCGuaCAGgC- -5'
26265 5' -58.7 NC_005345.2 + 10058 0.66 0.527151
Target:  5'- aCCgACgACGCCGAcGUCGcGGCGagcGUCCa -3'
miRNA:   3'- -GG-UG-UGCGGCUcCAGC-CCGUa--CAGGc -5'
26265 5' -58.7 NC_005345.2 + 26640 0.66 0.527151
Target:  5'- aCUACACcgagGCCGAGGUgcggUGGGCGaacCCGg -3'
miRNA:   3'- -GGUGUG----CGGCUCCA----GCCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 15490 0.66 0.515873
Target:  5'- cCCGagcuGCGCCGcaaGUCGGGCGuugcucuUGUCCu -3'
miRNA:   3'- -GGUg---UGCGGCuc-CAGCCCGU-------ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 5224 0.66 0.510779
Target:  5'- gCUACACGCCGucgGGGUgcccgcgguacacggUGGGCGUGaCgGg -3'
miRNA:   3'- -GGUGUGCGGC---UCCA---------------GCCCGUACaGgC- -5'
26265 5' -58.7 NC_005345.2 + 39754 0.66 0.510779
Target:  5'- gCCACGCGCCgucgacgacggcgagGAGGaguggCGGGUGUGgacgCUGc -3'
miRNA:   3'- -GGUGUGCGG---------------CUCCa----GCCCGUACa---GGC- -5'
26265 5' -58.7 NC_005345.2 + 19988 0.66 0.506718
Target:  5'- cCCGguuCGCCGAGGgcgacaggCGGGC-UG-CCGg -3'
miRNA:   3'- -GGUgu-GCGGCUCCa-------GCCCGuACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 21781 0.66 0.506718
Target:  5'- -gGCGaGCCGGGGUCGGGUGgacUGaUUCGa -3'
miRNA:   3'- ggUGUgCGGCUCCAGCCCGU---AC-AGGC- -5'
26265 5' -58.7 NC_005345.2 + 18499 0.67 0.496629
Target:  5'- aCC-CGgGUCGAGGUCGagcgaguacgcGGCGUcggcGUCCGg -3'
miRNA:   3'- -GGuGUgCGGCUCCAGC-----------CCGUA----CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 43608 0.67 0.496629
Target:  5'- uUCGuCACGCUGAucaGGUCGGGCccc-CCGg -3'
miRNA:   3'- -GGU-GUGCGGCU---CCAGCCCGuacaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.