miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 5' -55.6 NC_005345.2 + 34776 0.66 0.662879
Target:  5'- -gCGGcuACGCGAUCGUGCagGGGCUg--- -3'
miRNA:   3'- caGCU--UGCGCUGGUACG--CCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 46066 0.66 0.662879
Target:  5'- gGUCGAucAgGCGGCCGggGCcgccgGGGCCUg-- -3'
miRNA:   3'- -CAGCU--UgCGCUGGUa-CG-----CCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 15893 0.66 0.651712
Target:  5'- uUCcGGCGUG-CCAUGcCGGGCCgUGUg -3'
miRNA:   3'- cAGcUUGCGCuGGUAC-GCCCGGaAUA- -5'
26266 5' -55.6 NC_005345.2 + 15706 0.66 0.640528
Target:  5'- --aGGugGUGACaCAccuUGCGGGCCg--- -3'
miRNA:   3'- cagCUugCGCUG-GU---ACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 18801 0.66 0.640528
Target:  5'- cGUCGGGCaggGUGACgGcggcGCGGGCCUg-- -3'
miRNA:   3'- -CAGCUUG---CGCUGgUa---CGCCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 13774 0.66 0.629335
Target:  5'- -aUGAGCGCG-CCGaacGCGGGCUUg-- -3'
miRNA:   3'- caGCUUGCGCuGGUa--CGCCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 4282 0.66 0.629335
Target:  5'- cUCGcGACGCGGCCGccGCGGGgCg--- -3'
miRNA:   3'- cAGC-UUGCGCUGGUa-CGCCCgGaaua -5'
26266 5' -55.6 NC_005345.2 + 39210 0.66 0.618145
Target:  5'- -gCGggUugGCGACCGU-CGGGCCg--- -3'
miRNA:   3'- caGCuuG--CGCUGGUAcGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 24646 0.66 0.618145
Target:  5'- -gCGGugGuCGACCAggaucccGCGGGCCc--- -3'
miRNA:   3'- caGCUugC-GCUGGUa------CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 18042 0.66 0.618145
Target:  5'- --gGAACGCGGCCAcguugcgGCGGGUg---- -3'
miRNA:   3'- cagCUUGCGCUGGUa------CGCCCGgaaua -5'
26266 5' -55.6 NC_005345.2 + 46394 0.66 0.618145
Target:  5'- -cCGcGCGUGGCgcgcuccaCAUGCGGGCCg--- -3'
miRNA:   3'- caGCuUGCGCUG--------GUACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 37856 0.66 0.618145
Target:  5'- gGUCGGuCGCGGCCG-GCGaGGCUc--- -3'
miRNA:   3'- -CAGCUuGCGCUGGUaCGC-CCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 654 0.66 0.606968
Target:  5'- -gUGAGCGgGACCGUGCGGaacCCg--- -3'
miRNA:   3'- caGCUUGCgCUGGUACGCCc--GGaaua -5'
26266 5' -55.6 NC_005345.2 + 19997 0.66 0.606968
Target:  5'- -cCGAGgGCGACag-GCGGGCUg--- -3'
miRNA:   3'- caGCUUgCGCUGguaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 28937 0.67 0.595813
Target:  5'- aUCGA--GCGACgCAgcUGaCGGGCCUUAUc -3'
miRNA:   3'- cAGCUugCGCUG-GU--AC-GCCCGGAAUA- -5'
26266 5' -55.6 NC_005345.2 + 34512 0.67 0.584689
Target:  5'- --aGGACGCGGUCGagGCGGGCCg--- -3'
miRNA:   3'- cagCUUGCGCUGGUa-CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 31190 0.67 0.584689
Target:  5'- cUCGGGCGCGGCgGgugcgGCGGGUg---- -3'
miRNA:   3'- cAGCUUGCGCUGgUa----CGCCCGgaaua -5'
26266 5' -55.6 NC_005345.2 + 37826 0.67 0.562575
Target:  5'- cUCGcGGCGCucGCCucacgGCGGGCCUUGa -3'
miRNA:   3'- cAGC-UUGCGc-UGGua---CGCCCGGAAUa -5'
26266 5' -55.6 NC_005345.2 + 31221 0.67 0.562575
Target:  5'- -cCGggUGCGGCCGgguguacgGCGGGUCc--- -3'
miRNA:   3'- caGCuuGCGCUGGUa-------CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 24695 0.67 0.5516
Target:  5'- cUCGAACGauccgcaaGAUC-UGCGGGCCg--- -3'
miRNA:   3'- cAGCUUGCg-------CUGGuACGCCCGGaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.