miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 44438 0.66 0.734322
Target:  5'- cGGUUGGcACCGuGAUCGccgccCUGUucGCCGCa -3'
miRNA:   3'- -CCAACU-UGGC-CUAGCu----GACGc-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 7034 0.66 0.734322
Target:  5'- cGGUcGAccgGCCGGcgAUCGAg-GCGGCC-Cg -3'
miRNA:   3'- -CCAaCU---UGGCC--UAGCUgaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 4233 0.66 0.734322
Target:  5'- ---cGAGCCGauGGUCGccGCUGCggagcgggacgaGGCCACg -3'
miRNA:   3'- ccaaCUUGGC--CUAGC--UGACG------------CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 19106 0.66 0.727944
Target:  5'- uGGcUGAugUGGGcgcucaccgcauggUGGCUGCGGgCCGCa -3'
miRNA:   3'- -CCaACUugGCCUa-------------GCUGACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 13633 0.66 0.723671
Target:  5'- ---gGAACCGGA-CGGC-GCGGCgugaGCg -3'
miRNA:   3'- ccaaCUUGGCCUaGCUGaCGCCGg---UG- -5'
26267 3' -54.9 NC_005345.2 + 10399 0.66 0.712929
Target:  5'- cGGcgUGAGCCGGG-CGAggGUcGCCACc -3'
miRNA:   3'- -CCa-ACUUGGCCUaGCUgaCGcCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 22258 0.66 0.71185
Target:  5'- aGGUgcugccgUGGGCgcagCGGAUCGuCgagGCGGCCGg -3'
miRNA:   3'- -CCA-------ACUUG----GCCUAGCuGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 19300 0.66 0.702105
Target:  5'- ---cGGACCGGGuccuUCGuCUuccacGUGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCU----AGCuGA-----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 21791 0.66 0.702105
Target:  5'- ---cGAGCCGGAcagcCGACgGCGGaaguaCCGCg -3'
miRNA:   3'- ccaaCUUGGCCUa---GCUGaCGCC-----GGUG- -5'
26267 3' -54.9 NC_005345.2 + 41220 0.66 0.702105
Target:  5'- ---cGAuCCGGuaagCGAUccgUGCGGCCAUg -3'
miRNA:   3'- ccaaCUuGGCCua--GCUG---ACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 30685 0.66 0.702105
Target:  5'- gGGUcGAcgauCCGGc-CGGCUGCggguGGCCGCg -3'
miRNA:   3'- -CCAaCUu---GGCCuaGCUGACG----CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 33501 0.67 0.680263
Target:  5'- ---cGGGCCcGGUCGcAUUGCGGCCcCg -3'
miRNA:   3'- ccaaCUUGGcCUAGC-UGACGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 36945 0.67 0.669267
Target:  5'- aGGcgGcGGCCGGAcagCGGCaGaCGGCCGCu -3'
miRNA:   3'- -CCaaC-UUGGCCUa--GCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 6834 0.67 0.669267
Target:  5'- ---cGGGCgGGAUCGACaugguccucGCGGCgACg -3'
miRNA:   3'- ccaaCUUGgCCUAGCUGa--------CGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 8379 0.67 0.669267
Target:  5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3'
miRNA:   3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 37695 0.67 0.669267
Target:  5'- cGGccgUGGGCCgccaguccugcgGGAUCGcGCUGCGGCgCGg -3'
miRNA:   3'- -CCa--ACUUGG------------CCUAGC-UGACGCCG-GUg -5'
26267 3' -54.9 NC_005345.2 + 41531 0.67 0.665961
Target:  5'- --cUGGGCCGGGUCGGCgaugugcuccgacacCGGCCuCg -3'
miRNA:   3'- ccaACUUGGCCUAGCUGac-------------GCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 10806 0.67 0.657131
Target:  5'- ---cGGACCGGcUCGAuuggugcCUGCGGCagaCACg -3'
miRNA:   3'- ccaaCUUGGCCuAGCU-------GACGCCG---GUG- -5'
26267 3' -54.9 NC_005345.2 + 16112 0.67 0.64718
Target:  5'- cGUcGAGCCGGAcCGcACcccGCGGCCGa -3'
miRNA:   3'- cCAaCUUGGCCUaGC-UGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 33566 0.67 0.64718
Target:  5'- aGGccUGAaaACCGGAcucgCGGCUgucGCGGUCGCc -3'
miRNA:   3'- -CCa-ACU--UGGCCUa---GCUGA---CGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.