Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26267 | 3' | -54.9 | NC_005345.2 | + | 4233 | 0.66 | 0.734322 |
Target: 5'- ---cGAGCCGauGGUCGccGCUGCggagcgggacgaGGCCACg -3' miRNA: 3'- ccaaCUUGGC--CUAGC--UGACG------------CCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 7034 | 0.66 | 0.734322 |
Target: 5'- cGGUcGAccgGCCGGcgAUCGAg-GCGGCC-Cg -3' miRNA: 3'- -CCAaCU---UGGCC--UAGCUgaCGCCGGuG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 44438 | 0.66 | 0.734322 |
Target: 5'- cGGUUGGcACCGuGAUCGccgccCUGUucGCCGCa -3' miRNA: 3'- -CCAACU-UGGC-CUAGCu----GACGc-CGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 19106 | 0.66 | 0.727944 |
Target: 5'- uGGcUGAugUGGGcgcucaccgcauggUGGCUGCGGgCCGCa -3' miRNA: 3'- -CCaACUugGCCUa-------------GCUGACGCC-GGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 13633 | 0.66 | 0.723671 |
Target: 5'- ---gGAACCGGA-CGGC-GCGGCgugaGCg -3' miRNA: 3'- ccaaCUUGGCCUaGCUGaCGCCGg---UG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 10399 | 0.66 | 0.712929 |
Target: 5'- cGGcgUGAGCCGGG-CGAggGUcGCCACc -3' miRNA: 3'- -CCa-ACUUGGCCUaGCUgaCGcCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 22258 | 0.66 | 0.71185 |
Target: 5'- aGGUgcugccgUGGGCgcagCGGAUCGuCgagGCGGCCGg -3' miRNA: 3'- -CCA-------ACUUG----GCCUAGCuGa--CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 30685 | 0.66 | 0.702105 |
Target: 5'- gGGUcGAcgauCCGGc-CGGCUGCggguGGCCGCg -3' miRNA: 3'- -CCAaCUu---GGCCuaGCUGACG----CCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 19300 | 0.66 | 0.702105 |
Target: 5'- ---cGGACCGGGuccuUCGuCUuccacGUGGCCGCg -3' miRNA: 3'- ccaaCUUGGCCU----AGCuGA-----CGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 21791 | 0.66 | 0.702105 |
Target: 5'- ---cGAGCCGGAcagcCGACgGCGGaaguaCCGCg -3' miRNA: 3'- ccaaCUUGGCCUa---GCUGaCGCC-----GGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 41220 | 0.66 | 0.702105 |
Target: 5'- ---cGAuCCGGuaagCGAUccgUGCGGCCAUg -3' miRNA: 3'- ccaaCUuGGCCua--GCUG---ACGCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 33501 | 0.67 | 0.680263 |
Target: 5'- ---cGGGCCcGGUCGcAUUGCGGCCcCg -3' miRNA: 3'- ccaaCUUGGcCUAGC-UGACGCCGGuG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 6834 | 0.67 | 0.669267 |
Target: 5'- ---cGGGCgGGAUCGACaugguccucGCGGCgACg -3' miRNA: 3'- ccaaCUUGgCCUAGCUGa--------CGCCGgUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 8379 | 0.67 | 0.669267 |
Target: 5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3' miRNA: 3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 37695 | 0.67 | 0.669267 |
Target: 5'- cGGccgUGGGCCgccaguccugcgGGAUCGcGCUGCGGCgCGg -3' miRNA: 3'- -CCa--ACUUGG------------CCUAGC-UGACGCCG-GUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 36945 | 0.67 | 0.669267 |
Target: 5'- aGGcgGcGGCCGGAcagCGGCaGaCGGCCGCu -3' miRNA: 3'- -CCaaC-UUGGCCUa--GCUGaC-GCCGGUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 41531 | 0.67 | 0.665961 |
Target: 5'- --cUGGGCCGGGUCGGCgaugugcuccgacacCGGCCuCg -3' miRNA: 3'- ccaACUUGGCCUAGCUGac-------------GCCGGuG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 10806 | 0.67 | 0.657131 |
Target: 5'- ---cGGACCGGcUCGAuuggugcCUGCGGCagaCACg -3' miRNA: 3'- ccaaCUUGGCCuAGCU-------GACGCCG---GUG- -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 16112 | 0.67 | 0.64718 |
Target: 5'- cGUcGAGCCGGAcCGcACcccGCGGCCGa -3' miRNA: 3'- cCAaCUUGGCCUaGC-UGa--CGCCGGUg -5' |
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26267 | 3' | -54.9 | NC_005345.2 | + | 33566 | 0.67 | 0.64718 |
Target: 5'- aGGccUGAaaACCGGAcucgCGGCUgucGCGGUCGCc -3' miRNA: 3'- -CCa-ACU--UGGCCUa---GCUGA---CGCCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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