miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 19300 0.66 0.702105
Target:  5'- ---cGGACCGGGuccuUCGuCUuccacGUGGCCGCg -3'
miRNA:   3'- ccaaCUUGGCCU----AGCuGA-----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 33501 0.67 0.680263
Target:  5'- ---cGGGCCcGGUCGcAUUGCGGCCcCg -3'
miRNA:   3'- ccaaCUUGGcCUAGC-UGACGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 37695 0.67 0.669267
Target:  5'- cGGccgUGGGCCgccaguccugcgGGAUCGcGCUGCGGCgCGg -3'
miRNA:   3'- -CCa--ACUUGG------------CCUAGC-UGACGCCG-GUg -5'
26267 3' -54.9 NC_005345.2 + 8379 0.67 0.669267
Target:  5'- aGGUgugGAACCG---CGGCcgGCGGCCGa -3'
miRNA:   3'- -CCAa--CUUGGCcuaGCUGa-CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 41026 0.68 0.613969
Target:  5'- ---aGAGCCG--UCGACgacgGCGGCCGg -3'
miRNA:   3'- ccaaCUUGGCcuAGCUGa---CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30237 0.69 0.560141
Target:  5'- cGG-UGAGCCGG-UCGACgacggugcggguccgGCcGGUCACa -3'
miRNA:   3'- -CCaACUUGGCCuAGCUGa--------------CG-CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 12669 0.68 0.568859
Target:  5'- cGUUGGcguacccGCCGGGUCGGUUGUaGGCCGa -3'
miRNA:   3'- cCAACU-------UGGCCUAGCUGACG-CCGGUg -5'
26267 3' -54.9 NC_005345.2 + 46046 0.68 0.569951
Target:  5'- cGGUauguccgGGGCCcgaGGGUCGAUcagGCGGCCGg -3'
miRNA:   3'- -CCAa------CUUGG---CCUAGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 30877 0.68 0.569951
Target:  5'- gGGUgcuccgGGugCGGG-CGACggcGCGGCCGg -3'
miRNA:   3'- -CCAa-----CUugGCCUaGCUGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 48717 0.68 0.5809
Target:  5'- aGGUgaaGAACCGGGacacCGGCcgcauggagugGUGGCCGCg -3'
miRNA:   3'- -CCAa--CUUGGCCUa---GCUGa----------CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 6360 0.68 0.591891
Target:  5'- ---gGcGCCGGGUUGGCcGCGGUgGCg -3'
miRNA:   3'- ccaaCuUGGCCUAGCUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 2641 0.7 0.495166
Target:  5'- cGGacuGACCGGGUCaaaGCUcgcaGCGGCCACg -3'
miRNA:   3'- -CCaacUUGGCCUAGc--UGA----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 40756 0.7 0.464473
Target:  5'- gGGgcGGACCGu-UCGGCcGcCGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCcuAGCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 14909 0.7 0.464473
Target:  5'- cGGgcGAAgCGGGccgCGGCgcgGCGGCUGCa -3'
miRNA:   3'- -CCaaCUUgGCCUa--GCUGa--CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 7453 0.7 0.454463
Target:  5'- ---aGGACCGGAUCguGACcGCGGCaGCg -3'
miRNA:   3'- ccaaCUUGGCCUAG--CUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 20503 0.71 0.424199
Target:  5'- cGGUcgGGGCUuuccgcugccccgGGAUCGGcCUGCGGCgACa -3'
miRNA:   3'- -CCAa-CUUGG-------------CCUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 27036 0.71 0.415641
Target:  5'- gGGUcGuGCCGG-UCG-UUGUGGCCACg -3'
miRNA:   3'- -CCAaCuUGGCCuAGCuGACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 951 0.73 0.30995
Target:  5'- gGGUUGAACgGGAuacgccggccguccUUGACgGCGGCC-Cg -3'
miRNA:   3'- -CCAACUUGgCCU--------------AGCUGaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 36769 0.73 0.304592
Target:  5'- cGUUG-ACCGGGUCGGCgucgGCGaucggcacaGCCGCa -3'
miRNA:   3'- cCAACuUGGCCUAGCUGa---CGC---------CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 44438 0.66 0.734322
Target:  5'- cGGUUGGcACCGuGAUCGccgccCUGUucGCCGCa -3'
miRNA:   3'- -CCAACU-UGGC-CUAGCu----GACGc-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.