miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 41400 0.66 0.638836
Target:  5'- ---cGUGCaGCG-GCGugCCGucgagCCGGu -3'
miRNA:   3'- cguaCACG-CGCuCGCugGGCua---GGCC- -5'
26267 5' -57.2 NC_005345.2 + 5775 0.66 0.638836
Target:  5'- cGCAgGUGCuCG-GCGugCCGuacCCGGc -3'
miRNA:   3'- -CGUaCACGcGCuCGCugGGCua-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 43939 0.66 0.638836
Target:  5'- gGCGUGUaGCGcCGGGCcggccGugCCGAUgcgugcagcCCGGc -3'
miRNA:   3'- -CGUACA-CGC-GCUCG-----CugGGCUA---------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 22556 0.66 0.638836
Target:  5'- cGCAgcgaGCGCGAGCa--CCGAUUCGa -3'
miRNA:   3'- -CGUaca-CGCGCUCGcugGGCUAGGCc -5'
26267 5' -57.2 NC_005345.2 + 1478 0.66 0.638836
Target:  5'- cCGUGaUGCG-GAGCGGCCCGcggUGGa -3'
miRNA:   3'- cGUAC-ACGCgCUCGCUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 11492 0.66 0.628038
Target:  5'- -----cGCGCaGGCGGCCCGcaccgacgCCGGa -3'
miRNA:   3'- cguacaCGCGcUCGCUGGGCua------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 47368 0.66 0.620482
Target:  5'- -gGUGUG-GCGAGUgcugccuGACCCcgcgcguaagccgccGAUCCGGu -3'
miRNA:   3'- cgUACACgCGCUCG-------CUGGG---------------CUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 28121 0.66 0.606463
Target:  5'- cGCGcGUGC-CGAGgaaCGcACCCGggCCGGc -3'
miRNA:   3'- -CGUaCACGcGCUC---GC-UGGGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 41878 0.66 0.606463
Target:  5'- gGCGaucGCGCGGGCGGCgacgcuugUCGGUUCGGc -3'
miRNA:   3'- -CGUacaCGCGCUCGCUG--------GGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 7031 0.66 0.606463
Target:  5'- cGCcgGUcgaccggccgGCGauCGAgGCGGCCCGG-CCGGa -3'
miRNA:   3'- -CGuaCA----------CGC--GCU-CGCUGGGCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 21763 0.66 0.606463
Target:  5'- --cUGUGCugcucgcugGCGGGCGAgCCGGggUCGGg -3'
miRNA:   3'- cguACACG---------CGCUCGCUgGGCUa-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 25263 0.66 0.605386
Target:  5'- gGCAccUGCucaacucccgucgGCGuaaGACCCGGUCCGGg -3'
miRNA:   3'- -CGUacACG-------------CGCucgCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 9510 0.66 0.595702
Target:  5'- cGCGggcccUGUGCGCGcAGacCGACCCGGagcuguuccacCCGGa -3'
miRNA:   3'- -CGU-----ACACGCGC-UC--GCUGGGCUa----------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 39056 0.66 0.586043
Target:  5'- cGCAUGUGcCGCucggcccggaugacGAGCGccucgacggcgucgaACCCGAUCgCGu -3'
miRNA:   3'- -CGUACAC-GCG--------------CUCGC---------------UGGGCUAG-GCc -5'
26267 5' -57.2 NC_005345.2 + 6561 0.67 0.563632
Target:  5'- aCGUGgcuaCGCGGGCgGACCCGugaCGGg -3'
miRNA:   3'- cGUACac--GCGCUCG-CUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 34149 0.67 0.563632
Target:  5'- -aGUG-GCGCGgcGGCGGcCCCGAggaguggcCCGGg -3'
miRNA:   3'- cgUACaCGCGC--UCGCU-GGGCUa-------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 38040 0.67 0.563632
Target:  5'- -gGUGagcUGCGCG-GCGACCCaacuUCCGa -3'
miRNA:   3'- cgUAC---ACGCGCuCGCUGGGcu--AGGCc -5'
26267 5' -57.2 NC_005345.2 + 30965 0.67 0.557269
Target:  5'- uGCAuUGgaacgGCGCGcgguucgaggugaucGGCccGCCCGGUCCGGc -3'
miRNA:   3'- -CGU-ACa----CGCGC---------------UCGc-UGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 40775 0.67 0.553039
Target:  5'- gGCcgGUcggccgGCGCGGGCGugUCGcguUCCGu -3'
miRNA:   3'- -CGuaCA------CGCGCUCGCugGGCu--AGGCc -5'
26267 5' -57.2 NC_005345.2 + 43937 0.67 0.553039
Target:  5'- gGCcgGc-CGCGAGCuGCCCGGccgugCCGGg -3'
miRNA:   3'- -CGuaCacGCGCUCGcUGGGCUa----GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.