miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 5' -60 NC_005345.2 + 10090 0.66 0.455032
Target:  5'- cUCGAUCGCCGCcuGCGUaGCGcccaccGGcCGGUu -3'
miRNA:   3'- aAGCUAGUGGCGc-UGCA-CGC------CC-GCCA- -5'
26269 5' -60 NC_005345.2 + 28514 0.66 0.455032
Target:  5'- cUCGAUCAagaCGCaGACGUucGgGGGCGa- -3'
miRNA:   3'- aAGCUAGUg--GCG-CUGCA--CgCCCGCca -5'
26269 5' -60 NC_005345.2 + 20147 0.66 0.455032
Target:  5'- gUUCGGgagcCACCGCG-CGagGCGGaaGCGGUu -3'
miRNA:   3'- -AAGCUa---GUGGCGCuGCa-CGCC--CGCCA- -5'
26269 5' -60 NC_005345.2 + 33022 0.66 0.454062
Target:  5'- -aCGAUCgggcucgGCCGCGGgGUGCGGucCGGc -3'
miRNA:   3'- aaGCUAG-------UGGCGCUgCACGCCc-GCCa -5'
26269 5' -60 NC_005345.2 + 38261 0.66 0.445391
Target:  5'- aUCGAUgACgUGCGG-GUGCGGGCacGGg -3'
miRNA:   3'- aAGCUAgUG-GCGCUgCACGCCCG--CCa -5'
26269 5' -60 NC_005345.2 + 31147 0.66 0.445391
Target:  5'- cUCGAUCGCacucgggugCGCGGggucgaaGUGCGGGUGcGUa -3'
miRNA:   3'- aAGCUAGUG---------GCGCUg------CACGCCCGC-CA- -5'
26269 5' -60 NC_005345.2 + 32790 0.66 0.445391
Target:  5'- -gCGAUCACCGCGGCGc-CGGccGCGa- -3'
miRNA:   3'- aaGCUAGUGGCGCUGCacGCC--CGCca -5'
26269 5' -60 NC_005345.2 + 864 0.66 0.445391
Target:  5'- -aCGAUCAgCGCGcacugcGCGcgGuCGGGCGGc -3'
miRNA:   3'- aaGCUAGUgGCGC------UGCa-C-GCCCGCCa -5'
26269 5' -60 NC_005345.2 + 43497 0.66 0.443477
Target:  5'- cUCGAUCGCCgccaaggucGCGGCGaacccggcgcucGCGGaGCGGa -3'
miRNA:   3'- aAGCUAGUGG---------CGCUGCa-----------CGCC-CGCCa -5'
26269 5' -60 NC_005345.2 + 22774 0.66 0.439662
Target:  5'- cUCGGUCACCucgggagggauccgcGCGAuccuCGgcgGgGGGCGGg -3'
miRNA:   3'- aAGCUAGUGG---------------CGCU----GCa--CgCCCGCCa -5'
26269 5' -60 NC_005345.2 + 10781 0.66 0.435867
Target:  5'- gUCGAgacaGCCGCGcuGCG-GCaGGCGGa -3'
miRNA:   3'- aAGCUag--UGGCGC--UGCaCGcCCGCCa -5'
26269 5' -60 NC_005345.2 + 34520 0.66 0.435867
Target:  5'- gUCGAggcggGCCGCGGCcucGCGGGCGu- -3'
miRNA:   3'- aAGCUag---UGGCGCUGca-CGCCCGCca -5'
26269 5' -60 NC_005345.2 + 40495 0.66 0.435867
Target:  5'- --aGAUCGCCGCGACGauCGGcGCcgaGGUg -3'
miRNA:   3'- aagCUAGUGGCGCUGCacGCC-CG---CCA- -5'
26269 5' -60 NC_005345.2 + 4390 0.66 0.43209
Target:  5'- gUCGGUCACCGUGAUucuccugucagucaGUGCgagcugugccacgGGGCGa- -3'
miRNA:   3'- aAGCUAGUGGCGCUG--------------CACG-------------CCCGCca -5'
26269 5' -60 NC_005345.2 + 28392 0.66 0.42646
Target:  5'- -aCGcgcCGCCGCGGCGgcagcggcagGCaGGGCGGa -3'
miRNA:   3'- aaGCua-GUGGCGCUGCa---------CG-CCCGCCa -5'
26269 5' -60 NC_005345.2 + 8726 0.66 0.417176
Target:  5'- -cCGAUCGCCGCGuCGgugGCGaGCGcGa -3'
miRNA:   3'- aaGCUAGUGGCGCuGCa--CGCcCGC-Ca -5'
26269 5' -60 NC_005345.2 + 3936 0.66 0.417176
Target:  5'- gUCGAggugcUCGCCGCGGcCGgcagccucuCGGGCGGc -3'
miRNA:   3'- aAGCU-----AGUGGCGCU-GCac-------GCCCGCCa -5'
26269 5' -60 NC_005345.2 + 31178 0.66 0.408016
Target:  5'- aUCGAg-GCCGCGGCccgGCaGGCGGc -3'
miRNA:   3'- aAGCUagUGGCGCUGca-CGcCCGCCa -5'
26269 5' -60 NC_005345.2 + 11378 0.66 0.408016
Target:  5'- -cCGGUCGCgGCcGCcUGCGGGCGa- -3'
miRNA:   3'- aaGCUAGUGgCGcUGcACGCCCGCca -5'
26269 5' -60 NC_005345.2 + 34748 0.66 0.408016
Target:  5'- -gUGAUCcUCGCGGCG-GCG-GCGGUg -3'
miRNA:   3'- aaGCUAGuGGCGCUGCaCGCcCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.