miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 48624 0.66 0.365825
Target:  5'- uCGuguuCCGcGGCCCACAGGgCG-GCGUc -3'
miRNA:   3'- -GCu---GGCaCUGGGUGUCCgGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 47946 0.71 0.167612
Target:  5'- gCGG-CGUGGCCCGCGGGCCGgacugccgagccgccCGUGUg -3'
miRNA:   3'- -GCUgGCACUGGGUGUCCGGC---------------GCGCGu -5'
26271 3' -62 NC_005345.2 + 47099 0.73 0.114163
Target:  5'- -cGCCGcGGCCCGcCGGGCCGCGC-CGg -3'
miRNA:   3'- gcUGGCaCUGGGU-GUCCGGCGCGcGU- -5'
26271 3' -62 NC_005345.2 + 46076 0.68 0.262448
Target:  5'- gCGGCCG-GGgCCGCcgGGGCCuGCGCGg- -3'
miRNA:   3'- -GCUGGCaCUgGGUG--UCCGG-CGCGCgu -5'
26271 3' -62 NC_005345.2 + 45825 0.76 0.07571
Target:  5'- gCGACCGUGACgUGCAcGGCgGCgGCGCGg -3'
miRNA:   3'- -GCUGGCACUGgGUGU-CCGgCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 45693 0.72 0.145343
Target:  5'- gCGACCGUGGacagguCCCgGCGGGCgggggucugCGUGCGCAg -3'
miRNA:   3'- -GCUGGCACU------GGG-UGUCCG---------GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 45563 0.73 0.111112
Target:  5'- gGGCCGacGACCCGCAGG-UGCGCGaCAc -3'
miRNA:   3'- gCUGGCa-CUGGGUGUCCgGCGCGC-GU- -5'
26271 3' -62 NC_005345.2 + 45394 0.67 0.310884
Target:  5'- uCGGCCGUccagcggagccaGuCCgACAGGCgGCGCGg- -3'
miRNA:   3'- -GCUGGCA------------CuGGgUGUCCGgCGCGCgu -5'
26271 3' -62 NC_005345.2 + 44207 0.66 0.341483
Target:  5'- gGucuCCGUGACcgCCACccGGCCGgaGCGCAc -3'
miRNA:   3'- gCu--GGCACUG--GGUGu-CCGGCg-CGCGU- -5'
26271 3' -62 NC_005345.2 + 43868 0.67 0.325917
Target:  5'- uCGGCCGgGACuCCGC-GGCggaGCGCGUc -3'
miRNA:   3'- -GCUGGCaCUG-GGUGuCCGg--CGCGCGu -5'
26271 3' -62 NC_005345.2 + 42440 0.66 0.357579
Target:  5'- -cACCGUG-CCCGCcGGCUGCuCGUg -3'
miRNA:   3'- gcUGGCACuGGGUGuCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 41798 0.66 0.349465
Target:  5'- cCGGCUGcGcCaCCGCGGGCCacaccGCGUGCGa -3'
miRNA:   3'- -GCUGGCaCuG-GGUGUCCGG-----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 40754 0.66 0.357579
Target:  5'- uCGACCGgcagcGGCUCGuCGGGCCGgucggccgGCGCGg -3'
miRNA:   3'- -GCUGGCa----CUGGGU-GUCCGGCg-------CGCGU- -5'
26271 3' -62 NC_005345.2 + 39231 0.66 0.3742
Target:  5'- uGACCGUGuggcgggucgGCCCggACGGGaagcgcacguUCGUGCGCGg -3'
miRNA:   3'- gCUGGCAC----------UGGG--UGUCC----------GGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 38854 0.71 0.170267
Target:  5'- gGGCCGcu-CCCACAGcCCGCGcCGCAu -3'
miRNA:   3'- gCUGGCacuGGGUGUCcGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 38534 0.69 0.214805
Target:  5'- uCGAcCCG-GGCCgACcGGCCGCGcCGCu -3'
miRNA:   3'- -GCU-GGCaCUGGgUGuCCGGCGC-GCGu -5'
26271 3' -62 NC_005345.2 + 38065 1.08 0.000242
Target:  5'- cCGACCGUGACCCACAGGCCGCGCGCAg -3'
miRNA:   3'- -GCUGGCACUGGGUGUCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 37948 0.66 0.357579
Target:  5'- uGcCCGUG--CCACAGGCCG-GCGUc -3'
miRNA:   3'- gCuGGCACugGGUGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 37823 0.68 0.262448
Target:  5'- aCGGCCGgaacGGCCCGgGGGCCcugacUGUGCGg -3'
miRNA:   3'- -GCUGGCa---CUGGGUgUCCGGc----GCGCGU- -5'
26271 3' -62 NC_005345.2 + 37694 0.7 0.198944
Target:  5'- uCGGCCGUGGgccgccaguCCUGCGGGaUCGCGCuGCGg -3'
miRNA:   3'- -GCUGGCACU---------GGGUGUCC-GGCGCG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.