miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 3' -56.4 NC_005345.2 + 33336 0.66 0.625036
Target:  5'- --cCGuCGGCCGgAgucgccgagaGCGGCGcGAGAGGGg -3'
miRNA:   3'- cuaGC-GCCGGCgU----------UGUCGC-UUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 31268 0.66 0.613969
Target:  5'- gGGUgCGCGGgUGCGGgGGCGGgugcgcgccacgGGGGGAu -3'
miRNA:   3'- -CUA-GCGCCgGCGUUgUCGCU------------UCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 43241 0.66 0.613969
Target:  5'- uGUCGUGGcCCGCAuucauCAcCGAccaGGAGGAc -3'
miRNA:   3'- cUAGCGCC-GGCGUu----GUcGCU---UCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 22680 0.66 0.613969
Target:  5'- aGUCGCucGUCGUGGCGGUGAAGcGGGg -3'
miRNA:   3'- cUAGCGc-CGGCGUUGUCGCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 30836 0.66 0.613969
Target:  5'- --gCGUGGCUGCAGCAgaacacuggccGCGAGGAc-- -3'
miRNA:   3'- cuaGCGCCGGCGUUGU-----------CGCUUCUccu -5'
26272 3' -56.4 NC_005345.2 + 41107 0.66 0.602917
Target:  5'- --aCGCgGGCCGCAGCAcgcccGCGGuacGGGGc -3'
miRNA:   3'- cuaGCG-CCGGCGUUGU-----CGCUu--CUCCu -5'
26272 3' -56.4 NC_005345.2 + 25112 0.66 0.602917
Target:  5'- --cCGCGGCUGCA--GGUGAAGGugacgcGGAa -3'
miRNA:   3'- cuaGCGCCGGCGUugUCGCUUCU------CCU- -5'
26272 3' -56.4 NC_005345.2 + 18655 0.66 0.602917
Target:  5'- gGGUCGCuGUC-CGGCAGCcucaccGAAGAGGGu -3'
miRNA:   3'- -CUAGCGcCGGcGUUGUCG------CUUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 18045 0.66 0.602917
Target:  5'- --aCGCGGCCaCGuuGCGGCGGguGGuGGAc -3'
miRNA:   3'- cuaGCGCCGGcGU--UGUCGCU--UCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 16637 0.66 0.602917
Target:  5'- aGAUCG-GGCCGCccgcCGGC--AGAGGGa -3'
miRNA:   3'- -CUAGCgCCGGCGuu--GUCGcuUCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 18926 0.66 0.602917
Target:  5'- -cUCGCGGCuCGCGucggcgucgACguugaucucguGGCGgcGAGGAa -3'
miRNA:   3'- cuAGCGCCG-GCGU---------UG-----------UCGCuuCUCCU- -5'
26272 3' -56.4 NC_005345.2 + 21535 0.66 0.591891
Target:  5'- --aUGCGGUgaagaGCAGCAGgGAAG-GGAa -3'
miRNA:   3'- cuaGCGCCGg----CGUUGUCgCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 23594 0.66 0.5809
Target:  5'- gGGUCGCGGCguucggCGCGACgccGGCGGAccGGGc -3'
miRNA:   3'- -CUAGCGCCG------GCGUUG---UCGCUUcuCCU- -5'
26272 3' -56.4 NC_005345.2 + 10282 0.67 0.569951
Target:  5'- -cUCGCGGCCgGCGACAccggaccCGAGcGGGAa -3'
miRNA:   3'- cuAGCGCCGG-CGUUGUc------GCUUcUCCU- -5'
26272 3' -56.4 NC_005345.2 + 4915 0.67 0.563406
Target:  5'- --cUGCGGCUGCGuaggcgguugcccacACGGUGggG-GGAa -3'
miRNA:   3'- cuaGCGCCGGCGU---------------UGUCGCuuCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 12751 0.67 0.559054
Target:  5'- uGAUCGCcacccGGCCGCGGCAGaCGuGGcgcgcguGGAc -3'
miRNA:   3'- -CUAGCG-----CCGGCGUUGUC-GCuUCu------CCU- -5'
26272 3' -56.4 NC_005345.2 + 2580 0.67 0.548216
Target:  5'- -cUCGgGGCCGaggcuGACGGCGA--GGGAu -3'
miRNA:   3'- cuAGCgCCGGCg----UUGUCGCUucUCCU- -5'
26272 3' -56.4 NC_005345.2 + 34754 0.67 0.548216
Target:  5'- -cUCGCGGCgGCGGCGGUGAc----- -3'
miRNA:   3'- cuAGCGCCGgCGUUGUCGCUucuccu -5'
26272 3' -56.4 NC_005345.2 + 43499 0.67 0.548216
Target:  5'- cGAUCGCcgccaaGGUCGCGGCGaacccggcgcucGCGGAGcGGAu -3'
miRNA:   3'- -CUAGCG------CCGGCGUUGU------------CGCUUCuCCU- -5'
26272 3' -56.4 NC_005345.2 + 3426 0.67 0.537445
Target:  5'- cGggCGCGGCgGCgGGCGGCGAuGcGGGc -3'
miRNA:   3'- -CuaGCGCCGgCG-UUGUCGCUuCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.