miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 33789 0.66 0.394706
Target:  5'- -cGCUGcCGUCG-CCGCCuacuUCGCCGCa -3'
miRNA:   3'- ccCGAC-GUAGCgGGUGGu---GGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 22463 0.66 0.394706
Target:  5'- -cGCgGCGUCGgCCuuUACCGCCAUg -3'
miRNA:   3'- ccCGaCGUAGCgGGugGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 37645 0.66 0.394706
Target:  5'- cGGCUGCAguccggCGUcggugcgggCCGCCugCGCgGCc -3'
miRNA:   3'- cCCGACGUa-----GCG---------GGUGGugGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 27044 0.66 0.394706
Target:  5'- -uGCUGC-UCGCCaccgaGCCGCCGaCCGu- -3'
miRNA:   3'- ccCGACGuAGCGGg----UGGUGGC-GGUga -5'
26273 5' -61.1 NC_005345.2 + 24399 0.66 0.394706
Target:  5'- cGGGCUGCGacaGCCaCGCguCCGaCGCg -3'
miRNA:   3'- -CCCGACGUag-CGG-GUGguGGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 37476 0.66 0.394706
Target:  5'- -uGCUgaGCAgCGCCCcgaaguuggccGCUACCGCCGCc -3'
miRNA:   3'- ccCGA--CGUaGCGGG-----------UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 18337 0.66 0.385912
Target:  5'- cGGCgccgUGCAucucuUCGaCCCcgucACCGCCGUCACa -3'
miRNA:   3'- cCCG----ACGU-----AGC-GGG----UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 15709 0.66 0.377249
Target:  5'- uGGUgacacaccuUGCGggcCGCCCGCCACC-CUGCUg -3'
miRNA:   3'- cCCG---------ACGUa--GCGGGUGGUGGcGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 7831 0.66 0.377249
Target:  5'- cGGCgUGUAgggCGUCCAgCCGCCGgCGCc -3'
miRNA:   3'- cCCG-ACGUa--GCGGGU-GGUGGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 4645 0.66 0.377249
Target:  5'- cGGGC--CGUCGCCUGCUgugccucgGCCGUCGCc -3'
miRNA:   3'- -CCCGacGUAGCGGGUGG--------UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 9357 0.66 0.377249
Target:  5'- uGGCUGCGggcggccgggcUCGaCCACUACgggcaGCCGCUg -3'
miRNA:   3'- cCCGACGU-----------AGCgGGUGGUGg----CGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 7138 0.66 0.37639
Target:  5'- cGGGCgggGCAcgUgGCCCGggacgggucggacCCGCUGUCGCa -3'
miRNA:   3'- -CCCGa--CGU--AgCGGGU-------------GGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 28372 0.66 0.37382
Target:  5'- aGGGCggcggauaccaggGCA-CGCgCCGCCGCgGCgGCa -3'
miRNA:   3'- -CCCGa------------CGUaGCG-GGUGGUGgCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 39778 0.66 0.368717
Target:  5'- cGGCUGCccguagugGUCgaGCCCgGCCGCCcgcaGCCACc -3'
miRNA:   3'- cCCGACG--------UAG--CGGG-UGGUGG----CGGUGa -5'
26273 5' -61.1 NC_005345.2 + 12890 0.66 0.368717
Target:  5'- uGGCcGC-UCGCCUcgAUCGCCGCgACg -3'
miRNA:   3'- cCCGaCGuAGCGGG--UGGUGGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 42430 0.66 0.359487
Target:  5'- uGGGCuUGCAcaccgUGCCCGCCGgCugcucguGCCACc -3'
miRNA:   3'- -CCCG-ACGUa----GCGGGUGGUgG-------CGGUGa -5'
26273 5' -61.1 NC_005345.2 + 46237 0.66 0.357826
Target:  5'- uGGGCcGCugcccgguccgccgAUcCGCUCgucgagGCCACCGCCGCg -3'
miRNA:   3'- -CCCGaCG--------------UA-GCGGG------UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 40815 0.66 0.355345
Target:  5'- gGGGCgUGCAcCGCCgCcggaacgcugcugcuGCgCGCCGCCAUg -3'
miRNA:   3'- -CCCG-ACGUaGCGG-G---------------UG-GUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 10409 0.66 0.352055
Target:  5'- cGGGCgaGgGUCGCCaccccggaUACCACCGuCCAg- -3'
miRNA:   3'- -CCCGa-CgUAGCGG--------GUGGUGGC-GGUga -5'
26273 5' -61.1 NC_005345.2 + 37794 0.66 0.349603
Target:  5'- gGGGCUGCugccguuggcggugcCGCUCACUGCuCGCgGCg -3'
miRNA:   3'- -CCCGACGua-------------GCGGGUGGUG-GCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.