miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26274 3' -61.3 NC_005345.2 + 33444 0.66 0.45624
Target:  5'- gCCCGGggauUCGCcgaggaccugcaGCGGCagaUCGGCCGGc -3'
miRNA:   3'- -GGGCC----AGCGuaa---------CGCCGg--GGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 47799 0.66 0.443177
Target:  5'- aCCGGcUCGUg--GCaGGCgcguuaccgcgaCCCGGCCGGc -3'
miRNA:   3'- gGGCC-AGCGuaaCG-CCG------------GGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 13773 0.66 0.443177
Target:  5'- gCUCGGUgCGaucgaGUUcuacgacgGCGGCCCCGACaCGc -3'
miRNA:   3'- -GGGCCA-GCg----UAA--------CGCCGGGGCUG-GCc -5'
26274 3' -61.3 NC_005345.2 + 31308 0.66 0.443177
Target:  5'- gCCGGgCGCugcugcGCGGUCUggagggCGGCCGGa -3'
miRNA:   3'- gGGCCaGCGuaa---CGCCGGG------GCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 17841 0.66 0.443177
Target:  5'- gCCCGGcCGCc--G-GGCCCCGGCg-- -3'
miRNA:   3'- -GGGCCaGCGuaaCgCCGGGGCUGgcc -5'
26274 3' -61.3 NC_005345.2 + 12312 0.66 0.433977
Target:  5'- cCCCGaGU-GC---GCGGCgCCGAUCGGu -3'
miRNA:   3'- -GGGC-CAgCGuaaCGCCGgGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 3643 0.66 0.433977
Target:  5'- gCCGucCGCAgcccgGCGGCagCGGCCGGg -3'
miRNA:   3'- gGGCcaGCGUaa---CGCCGggGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 26627 0.66 0.433977
Target:  5'- uCCCGuGUCG------GGCgCCCGGCCGGg -3'
miRNA:   3'- -GGGC-CAGCguaacgCCG-GGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 33030 0.66 0.433977
Target:  5'- gCUCGGcCGCGgggUGCGGUCCggcuCGACguUGGg -3'
miRNA:   3'- -GGGCCaGCGUa--ACGCCGGG----GCUG--GCC- -5'
26274 3' -61.3 NC_005345.2 + 13157 0.66 0.424888
Target:  5'- aCuuGGUCGcCGUcucccacaUGCGGCCgggguCCGACaGGa -3'
miRNA:   3'- -GggCCAGC-GUA--------ACGCCGG-----GGCUGgCC- -5'
26274 3' -61.3 NC_005345.2 + 25734 0.66 0.424888
Target:  5'- aCCCGGgcgUCGCGgugGUGGCaggCGaACCGGc -3'
miRNA:   3'- -GGGCC---AGCGUaa-CGCCGgg-GC-UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 36123 0.66 0.424888
Target:  5'- aUCCGGUCGCcgcaguggGCacaccGCCaCCGugCGGc -3'
miRNA:   3'- -GGGCCAGCGuaa-----CGc----CGG-GGCugGCC- -5'
26274 3' -61.3 NC_005345.2 + 3839 0.66 0.415914
Target:  5'- --aGGUCgGCGgcgUGCGGaCCCGGCUGa -3'
miRNA:   3'- gggCCAG-CGUa--ACGCCgGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 22366 0.66 0.415914
Target:  5'- -aCGGgcgaCGUAUUGCGGUcgguUCCGGCuCGGu -3'
miRNA:   3'- ggGCCa---GCGUAACGCCG----GGGCUG-GCC- -5'
26274 3' -61.3 NC_005345.2 + 37716 0.66 0.415914
Target:  5'- gCgGGaUCGCGcugcggcGCGGCgCCGGCUGGu -3'
miRNA:   3'- gGgCC-AGCGUaa-----CGCCGgGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 29724 0.66 0.415914
Target:  5'- gCCCGGUgCGaccgacGCGGCgcagCCGACCGa -3'
miRNA:   3'- -GGGCCA-GCguaa--CGCCGg---GGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 39830 0.66 0.407057
Target:  5'- aCCC--UCgGCAUcGCGGgCUCGGCCGGc -3'
miRNA:   3'- -GGGccAG-CGUAaCGCCgGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 2369 0.66 0.407057
Target:  5'- gCCCGGUCGCGaccucGCGGgCCCaa--GGg -3'
miRNA:   3'- -GGGCCAGCGUaa---CGCCgGGGcuggCC- -5'
26274 3' -61.3 NC_005345.2 + 12649 0.66 0.407057
Target:  5'- gCCGGggCGCGgu-CGGCCgCCGuuggcguacccGCCGGg -3'
miRNA:   3'- gGGCCa-GCGUaacGCCGG-GGC-----------UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 3692 0.66 0.407057
Target:  5'- cCCCGGcCGCcgUcuCGGCCgCCGGCgGc -3'
miRNA:   3'- -GGGCCaGCGuaAc-GCCGG-GGCUGgCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.