miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26276 5' -56.9 NC_005345.2 + 38271 0.66 0.639831
Target:  5'- uGCGG-GUGCGGGCacggGACGcGCCgCGu -3'
miRNA:   3'- uCGCCaCAUGCUCGg---CUGCuUGG-GCu -5'
26276 5' -56.9 NC_005345.2 + 19129 0.66 0.639831
Target:  5'- -aUGGUGgcUGCGGGCCGcAUGGcgcgccACCCGGa -3'
miRNA:   3'- ucGCCAC--AUGCUCGGC-UGCU------UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 30256 0.66 0.639831
Target:  5'- cGCGGccgccgagcaGgcCGGGCuCGuCGAGCCCGAg -3'
miRNA:   3'- uCGCCa---------CauGCUCG-GCuGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 5334 0.66 0.639831
Target:  5'- aAGCGcugcaGUGCGGuGCCGugGGcgcgcuGCCCGGc -3'
miRNA:   3'- -UCGCca---CAUGCU-CGGCugCU------UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 6701 0.66 0.62895
Target:  5'- gAGgGGUGgcACGAgcaGCCGGCGGGCaCGGu -3'
miRNA:   3'- -UCgCCACa-UGCU---CGGCUGCUUGgGCU- -5'
26276 5' -56.9 NC_005345.2 + 18458 0.66 0.62895
Target:  5'- cGUGGUGgacCGGGuCCcGCGA-CCCGAa -3'
miRNA:   3'- uCGCCACau-GCUC-GGcUGCUuGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 29987 0.66 0.62895
Target:  5'- gGGCaGccGUACGGGcCCGGCGAcgacguCCCGGc -3'
miRNA:   3'- -UCGcCa-CAUGCUC-GGCUGCUu-----GGGCU- -5'
26276 5' -56.9 NC_005345.2 + 10551 0.66 0.62895
Target:  5'- cGGCGGUGgcCGAgguaaucccgGCCG-CGAGCgCCa- -3'
miRNA:   3'- -UCGCCACauGCU----------CGGCuGCUUG-GGcu -5'
26276 5' -56.9 NC_005345.2 + 40254 0.66 0.62895
Target:  5'- gAGCGGgg-ACGGggcGCCGGCGGGCauGAg -3'
miRNA:   3'- -UCGCCacaUGCU---CGGCUGCUUGggCU- -5'
26276 5' -56.9 NC_005345.2 + 30234 0.66 0.62895
Target:  5'- cGGCGGUGaGCcGGUCGACGAcggugcggguccGgCCGGu -3'
miRNA:   3'- -UCGCCACaUGcUCGGCUGCU------------UgGGCU- -5'
26276 5' -56.9 NC_005345.2 + 37031 0.66 0.62895
Target:  5'- cAGCGGcaccggGCGAGCCG--GGAUCCGGc -3'
miRNA:   3'- -UCGCCaca---UGCUCGGCugCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 27106 0.66 0.625686
Target:  5'- cGCGGUcggcucgugagcucGgcCGGGaccguCCGGCGGGCCCGGc -3'
miRNA:   3'- uCGCCA--------------CauGCUC-----GGCUGCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 31670 0.66 0.618073
Target:  5'- cGCGGcGUACaAGaUCGGCGAACuuGGg -3'
miRNA:   3'- uCGCCaCAUGcUC-GGCUGCUUGggCU- -5'
26276 5' -56.9 NC_005345.2 + 35100 0.66 0.618073
Target:  5'- cGGCGGUgGUGCGGGCgUGGCGggUg--- -3'
miRNA:   3'- -UCGCCA-CAUGCUCG-GCUGCuuGggcu -5'
26276 5' -56.9 NC_005345.2 + 35813 0.66 0.611552
Target:  5'- gAGCGGUGUcccuucuucugucggGCGAggGCgCGGCGGgugGCUCGGu -3'
miRNA:   3'- -UCGCCACA---------------UGCU--CG-GCUGCU---UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 7293 0.66 0.607207
Target:  5'- cGGU-GUGUACGAcGCCGAgguCGucCCCGAu -3'
miRNA:   3'- -UCGcCACAUGCU-CGGCU---GCuuGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 3439 0.66 0.596363
Target:  5'- gGGCGGcGaUGCGGGCCc-CGAGCUCGc -3'
miRNA:   3'- -UCGCCaC-AUGCUCGGcuGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 8365 0.66 0.596363
Target:  5'- cGUGaGUGUcgGCGAGgUGugGAACCgCGGc -3'
miRNA:   3'- uCGC-CACA--UGCUCgGCugCUUGG-GCU- -5'
26276 5' -56.9 NC_005345.2 + 780 0.66 0.596363
Target:  5'- cGGCGGcGgGgGAuGCCGAcCGGGCCCGc -3'
miRNA:   3'- -UCGCCaCaUgCU-CGGCU-GCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 19385 0.66 0.59528
Target:  5'- cGGCGGUcGUGcCGAGCagcgucgCGcCGAGCUCGGu -3'
miRNA:   3'- -UCGCCA-CAU-GCUCG-------GCuGCUUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.