miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 5' -65 NC_005345.2 + 17955 0.66 0.258928
Target:  5'- cCGGCGuccGCuCGGCCGccugccGG-GCCGC-GGCc -3'
miRNA:   3'- -GCCGU---CG-GCCGGCu-----CCaCGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 10398 0.66 0.258928
Target:  5'- aCGGCgugAGCCGGgCGAGG-GUCGCcaccccGGa -3'
miRNA:   3'- -GCCG---UCGGCCgGCUCCaCGGCGu-----CCg -5'
26277 5' -65 NC_005345.2 + 25532 0.66 0.258928
Target:  5'- uGcGCAGCCGuGCCc-GGU-CCGCcGGCg -3'
miRNA:   3'- gC-CGUCGGC-CGGcuCCAcGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 30370 0.66 0.258928
Target:  5'- aCGGCAGCCcGCgGcGG-GC-GCAGGUc -3'
miRNA:   3'- -GCCGUCGGcCGgCuCCaCGgCGUCCG- -5'
26277 5' -65 NC_005345.2 + 7867 0.66 0.258928
Target:  5'- aGGUguacAGCCuGCCGuGGgacGCCG-AGGCg -3'
miRNA:   3'- gCCG----UCGGcCGGCuCCa--CGGCgUCCG- -5'
26277 5' -65 NC_005345.2 + 25373 0.66 0.258928
Target:  5'- uGGCAguGCCGGCuCGAcGcgaucGCCGCcGGCc -3'
miRNA:   3'- gCCGU--CGGCCG-GCUcCa----CGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 27513 0.66 0.258928
Target:  5'- aCGaGCAGCUGcucaCCGAGGcGCaCGC-GGCg -3'
miRNA:   3'- -GC-CGUCGGCc---GGCUCCaCG-GCGuCCG- -5'
26277 5' -65 NC_005345.2 + 18767 0.66 0.258299
Target:  5'- aGGUAcgccucgaccugcGCCcGCCGcGGGcUGCCGuCGGGCa -3'
miRNA:   3'- gCCGU-------------CGGcCGGC-UCC-ACGGC-GUCCG- -5'
26277 5' -65 NC_005345.2 + 32835 0.66 0.257045
Target:  5'- -aGCAGUgGGCCGAguucgaggcgaucgGGcUGCCGCAGu- -3'
miRNA:   3'- gcCGUCGgCCGGCU--------------CC-ACGGCGUCcg -5'
26277 5' -65 NC_005345.2 + 20851 0.66 0.252694
Target:  5'- aGGUAGUCGGa-GAGaGUGCgGgAGGUa -3'
miRNA:   3'- gCCGUCGGCCggCUC-CACGgCgUCCG- -5'
26277 5' -65 NC_005345.2 + 5269 0.66 0.252694
Target:  5'- gCGGCagGGCgGGCuCGGGGgucggguacUGCgGgGGGCg -3'
miRNA:   3'- -GCCG--UCGgCCG-GCUCC---------ACGgCgUCCG- -5'
26277 5' -65 NC_005345.2 + 33436 0.66 0.252694
Target:  5'- uGGCGGgCGGCCcgcaAGGUGUgucaccaccUGCGGGg -3'
miRNA:   3'- gCCGUCgGCCGGc---UCCACG---------GCGUCCg -5'
26277 5' -65 NC_005345.2 + 42944 0.66 0.252694
Target:  5'- uCGGgAGgUGGCCaGGGcGCCGCGGaacGCg -3'
miRNA:   3'- -GCCgUCgGCCGGcUCCaCGGCGUC---CG- -5'
26277 5' -65 NC_005345.2 + 3236 0.66 0.252694
Target:  5'- gGGCAGCgcacugugcacgCGGCgCucGGUGCCG-AGGUa -3'
miRNA:   3'- gCCGUCG------------GCCG-GcuCCACGGCgUCCG- -5'
26277 5' -65 NC_005345.2 + 8391 0.66 0.252694
Target:  5'- gCGGCcGgCGGCCGAacGGU-CCGCcccaguacguaGGGCu -3'
miRNA:   3'- -GCCGuCgGCCGGCU--CCAcGGCG-----------UCCG- -5'
26277 5' -65 NC_005345.2 + 30233 0.66 0.252694
Target:  5'- cCGGCggugAGCCGGUCGAcgacGGUGCgGguccGGCc -3'
miRNA:   3'- -GCCG----UCGGCCGGCU----CCACGgCgu--CCG- -5'
26277 5' -65 NC_005345.2 + 33333 0.66 0.252694
Target:  5'- gGGCcGUCGGCCGGaGUcGCCGagagcGGCg -3'
miRNA:   3'- gCCGuCGGCCGGCUcCA-CGGCgu---CCG- -5'
26277 5' -65 NC_005345.2 + 34158 0.66 0.252694
Target:  5'- gCGGCGGCC--CCGAGGagugGCC-CGGGg -3'
miRNA:   3'- -GCCGUCGGccGGCUCCa---CGGcGUCCg -5'
26277 5' -65 NC_005345.2 + 25079 0.66 0.252694
Target:  5'- --aCGGCCGGCCGAucGGcucGCCGUAcGCg -3'
miRNA:   3'- gccGUCGGCCGGCU--CCa--CGGCGUcCG- -5'
26277 5' -65 NC_005345.2 + 14966 0.66 0.252694
Target:  5'- gCGGCugaucAGUCGGUCG-GG-GCCcCGGGCc -3'
miRNA:   3'- -GCCG-----UCGGCCGGCuCCaCGGcGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.