miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 3' -58.9 NC_005345.2 + 29977 0.66 0.583296
Target:  5'- gUCGAggGGCUCGUCGgcgUCCUCGgcCGGGg -3'
miRNA:   3'- gGGCUagCUGGGCAGC---AGGAGC--GCCU- -5'
26282 3' -58.9 NC_005345.2 + 24280 0.66 0.583296
Target:  5'- gCCGAUCaGCgCGgucgCGUCCgucacgcCGCGGGa -3'
miRNA:   3'- gGGCUAGcUGgGCa---GCAGGa------GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 18579 0.66 0.583296
Target:  5'- cCUCGGUgagguaCaGCCCGcCGUCCUCGCcGAg -3'
miRNA:   3'- -GGGCUA------GcUGGGCaGCAGGAGCGcCU- -5'
26282 3' -58.9 NC_005345.2 + 2455 0.66 0.583296
Target:  5'- uCCCGGUguaGGCCUGcccaGUCCUgCGCGcGAg -3'
miRNA:   3'- -GGGCUAg--CUGGGCag--CAGGA-GCGC-CU- -5'
26282 3' -58.9 NC_005345.2 + 42135 0.66 0.583296
Target:  5'- aCCGG-CGACCCGgCGUCgaUCGCa-- -3'
miRNA:   3'- gGGCUaGCUGGGCaGCAGg-AGCGccu -5'
26282 3' -58.9 NC_005345.2 + 18278 0.66 0.572848
Target:  5'- gCCGAucugugcgUCGcGCUgGUCGgugUCCUCGCGGc -3'
miRNA:   3'- gGGCU--------AGC-UGGgCAGC---AGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 13480 0.66 0.572848
Target:  5'- gCCCGA-CGGCaCCG-CGUCggUGCGGu -3'
miRNA:   3'- -GGGCUaGCUG-GGCaGCAGgaGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 46587 0.66 0.572848
Target:  5'- cCCCGAgcacgUCGACCgggcacucgcCGUCG-CCaccgCGUGGAa -3'
miRNA:   3'- -GGGCU-----AGCUGG----------GCAGCaGGa---GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 35976 0.66 0.571806
Target:  5'- gCCGGUC-AUCgGUUGUCCUUccgccgaGCGGAc -3'
miRNA:   3'- gGGCUAGcUGGgCAGCAGGAG-------CGCCU- -5'
26282 3' -58.9 NC_005345.2 + 10621 0.66 0.565561
Target:  5'- gCCGGUCGGCCCGggucgagcagcacgCGUgaCUcagggacCGCGGAc -3'
miRNA:   3'- gGGCUAGCUGGGCa-------------GCAg-GA-------GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 26221 0.66 0.562445
Target:  5'- gCCGGUCGAgCCGUaGUCCaUGCcGAc -3'
miRNA:   3'- gGGCUAGCUgGGCAgCAGGaGCGcCU- -5'
26282 3' -58.9 NC_005345.2 + 37673 0.66 0.562445
Target:  5'- gCCUGcgCGGCCCugauGUCGUCggcCGUGGGc -3'
miRNA:   3'- -GGGCuaGCUGGG----CAGCAGga-GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 8801 0.66 0.562445
Target:  5'- cCCaCGGcCGuACCCGUCGcCCgccacggCGCGGu -3'
miRNA:   3'- -GG-GCUaGC-UGGGCAGCaGGa------GCGCCu -5'
26282 3' -58.9 NC_005345.2 + 21378 0.66 0.552094
Target:  5'- aCCGAgcugCG-CCCGuUCGUCCUgcaGCGcGAc -3'
miRNA:   3'- gGGCUa---GCuGGGC-AGCAGGAg--CGC-CU- -5'
26282 3' -58.9 NC_005345.2 + 39564 0.66 0.552094
Target:  5'- gCCGGUccCGGCCgGUCGUgCguucgcaggugCGCGGGg -3'
miRNA:   3'- gGGCUA--GCUGGgCAGCAgGa----------GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 35507 0.66 0.552094
Target:  5'- gCUCG-UCGGCgcucacgccgcgCCGUCcgguUCCUCGCGGGg -3'
miRNA:   3'- -GGGCuAGCUG------------GGCAGc---AGGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 39063 0.66 0.552094
Target:  5'- gCCGcUCGGCCCGgaugacgagCG-CCUCGaCGGc -3'
miRNA:   3'- gGGCuAGCUGGGCa--------GCaGGAGC-GCCu -5'
26282 3' -58.9 NC_005345.2 + 36936 0.66 0.541801
Target:  5'- gUCCGGcCGACCgCGgcgaGUCCUCGCu-- -3'
miRNA:   3'- -GGGCUaGCUGG-GCag--CAGGAGCGccu -5'
26282 3' -58.9 NC_005345.2 + 41129 0.66 0.541801
Target:  5'- --aGGUCGAgCCCGUCGagCUCGUGa- -3'
miRNA:   3'- gggCUAGCU-GGGCAGCagGAGCGCcu -5'
26282 3' -58.9 NC_005345.2 + 19210 0.66 0.541801
Target:  5'- cCCCGAcgUCGAgCCG--GUCCUCGCc-- -3'
miRNA:   3'- -GGGCU--AGCUgGGCagCAGGAGCGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.