miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 5' -52.2 NC_005345.2 + 33192 0.66 0.877966
Target:  5'- --gCGACGAUcGCGggcagCGUGCUcaGCACGg -3'
miRNA:   3'- cgaGCUGCUAcUGCa----GUACGG--UGUGC- -5'
26282 5' -52.2 NC_005345.2 + 27904 0.66 0.877966
Target:  5'- aGCUCGGCGAc-GCGUUcgGUGUCGCuucCGa -3'
miRNA:   3'- -CGAGCUGCUacUGCAG--UACGGUGu--GC- -5'
26282 5' -52.2 NC_005345.2 + 4523 0.66 0.877966
Target:  5'- ---gGACGuAUGACGUCAguaGCCgGCGCu -3'
miRNA:   3'- cgagCUGC-UACUGCAGUa--CGG-UGUGc -5'
26282 5' -52.2 NC_005345.2 + 34050 0.66 0.877966
Target:  5'- gGCUCGACGGacaGGCGgCGguagGCCugauCACGc -3'
miRNA:   3'- -CGAGCUGCUa--CUGCaGUa---CGGu---GUGC- -5'
26282 5' -52.2 NC_005345.2 + 1617 0.66 0.870015
Target:  5'- cGUUCGGUGAUGAgGUCG-GUCGCgGCGa -3'
miRNA:   3'- -CGAGCUGCUACUgCAGUaCGGUG-UGC- -5'
26282 5' -52.2 NC_005345.2 + 30131 0.66 0.861806
Target:  5'- gGCUCgGGCGgcGACGUCGaggcGCCGCc-- -3'
miRNA:   3'- -CGAG-CUGCuaCUGCAGUa---CGGUGugc -5'
26282 5' -52.2 NC_005345.2 + 8440 0.66 0.861806
Target:  5'- aGCggucggUGugGAcgGACGgcaCcgGCCACACGu -3'
miRNA:   3'- -CGa-----GCugCUa-CUGCa--GuaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 25715 0.66 0.861806
Target:  5'- aCUCG-CGGguGCGcUCggGCCACACGa -3'
miRNA:   3'- cGAGCuGCUacUGC-AGuaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 37179 0.66 0.861806
Target:  5'- aGC-CGAccCGAcuUGACGUgGUGCgGCugGa -3'
miRNA:   3'- -CGaGCU--GCU--ACUGCAgUACGgUGugC- -5'
26282 5' -52.2 NC_005345.2 + 14702 0.66 0.85335
Target:  5'- uGCcCGugGuGUGGCGgcgagcUCGUGCUGCACa -3'
miRNA:   3'- -CGaGCugC-UACUGC------AGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 39737 0.66 0.844653
Target:  5'- -gUCGGCGA-GACccCGcUGCCACGCGc -3'
miRNA:   3'- cgAGCUGCUaCUGcaGU-ACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 43854 0.66 0.844653
Target:  5'- cGgUCGACGG-GGCGUCG-GCCGggacucCGCGg -3'
miRNA:   3'- -CgAGCUGCUaCUGCAGUaCGGU------GUGC- -5'
26282 5' -52.2 NC_005345.2 + 32224 0.66 0.844653
Target:  5'- gGCUCGuccGCGGUGACcgcgaccgggGUCA--CCACGCGc -3'
miRNA:   3'- -CGAGC---UGCUACUG----------CAGUacGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 2734 0.66 0.841998
Target:  5'- cGCcCGGCGAUGACagcggcccgcauguGgagCGcGCCACGCGc -3'
miRNA:   3'- -CGaGCUGCUACUG--------------Ca--GUaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 46778 0.67 0.826574
Target:  5'- gGCgcgCGACGggGAgGUCAcgcGCCguuGCGCGa -3'
miRNA:   3'- -CGa--GCUGCuaCUgCAGUa--CGG---UGUGC- -5'
26282 5' -52.2 NC_005345.2 + 48944 0.67 0.817211
Target:  5'- cGCUgCGGgCGGugUGACGcCGgaUGCCACGCa -3'
miRNA:   3'- -CGA-GCU-GCU--ACUGCaGU--ACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 15872 0.67 0.807647
Target:  5'- aGCUCGGCGcuuGUGAucuucuucCGgCGUGCCAUGCc -3'
miRNA:   3'- -CGAGCUGC---UACU--------GCaGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 22019 0.67 0.807647
Target:  5'- aGCUCGACGccGGCcg-GUGCCGC-CGu -3'
miRNA:   3'- -CGAGCUGCuaCUGcagUACGGUGuGC- -5'
26282 5' -52.2 NC_005345.2 + 33157 0.67 0.807647
Target:  5'- uGCUCG-CGAUGAaccUCGacGCCGCGCa -3'
miRNA:   3'- -CGAGCuGCUACUgc-AGUa-CGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 34049 0.67 0.807647
Target:  5'- -aUCGACGgcGAgaUCAgcgGCCGCGCGu -3'
miRNA:   3'- cgAGCUGCuaCUgcAGUa--CGGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.