miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26283 3' -61.8 NC_005345.2 + 37731 0.66 0.40801
Target:  5'- gGGCaaCCUGCU-GUCGUCGACcACCg- -3'
miRNA:   3'- gCCGc-GGGCGAgCAGCAGCUG-UGGga -5'
26283 3' -61.8 NC_005345.2 + 10145 0.66 0.40801
Target:  5'- gCGGCGgCCGCUCuG-CGga-GCGCCCg -3'
miRNA:   3'- -GCCGCgGGCGAG-CaGCagcUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 39456 0.66 0.406239
Target:  5'- gCGGCgGCCCGCUgaUCGgccugcagccggCGGCGCUCg -3'
miRNA:   3'- -GCCG-CGGGCGAgcAGCa-----------GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 17363 0.66 0.399201
Target:  5'- aCGGCGaaCCCGa--GUgCGUCGAC-CCCg -3'
miRNA:   3'- -GCCGC--GGGCgagCA-GCAGCUGuGGGa -5'
26283 3' -61.8 NC_005345.2 + 21227 0.66 0.399201
Target:  5'- aCGGCaCCgCGCUCGgaagCGACACCg- -3'
miRNA:   3'- -GCCGcGG-GCGAGCagcaGCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 7225 0.66 0.390514
Target:  5'- aCGGCGaCCGg-UGUCGUCGGCGacgaCCa -3'
miRNA:   3'- -GCCGCgGGCgaGCAGCAGCUGUg---GGa -5'
26283 3' -61.8 NC_005345.2 + 41911 0.66 0.390514
Target:  5'- uCGuCGCCUGgUCGUCGccgaCGACACCg- -3'
miRNA:   3'- -GCcGCGGGCgAGCAGCa---GCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 12548 0.66 0.390514
Target:  5'- cCGGcCGCCaucugcauugauCGUUCGUgGUCGaACACCUc -3'
miRNA:   3'- -GCC-GCGG------------GCGAGCAgCAGC-UGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 29151 0.66 0.381952
Target:  5'- cCGGCaGCCCGCcUGUCGcccUCGGCgaACCg- -3'
miRNA:   3'- -GCCG-CGGGCGaGCAGC---AGCUG--UGGga -5'
26283 3' -61.8 NC_005345.2 + 4147 0.66 0.381952
Target:  5'- gCGGCGCUCGUcgagCGggUGUCGACGCg-- -3'
miRNA:   3'- -GCCGCGGGCGa---GCa-GCAGCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 30959 0.66 0.381952
Target:  5'- uCGGCGCgCGcCUCGcCGaCGguguACGCCCa -3'
miRNA:   3'- -GCCGCGgGC-GAGCaGCaGC----UGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 34275 0.66 0.381952
Target:  5'- uCGGCccgaCUCGcCUCGgccgCGUCGAgCGCCCg -3'
miRNA:   3'- -GCCGc---GGGC-GAGCa---GCAGCU-GUGGGa -5'
26283 3' -61.8 NC_005345.2 + 21184 0.66 0.381952
Target:  5'- gCGGCcucgGCCUuguggucggGCUUGUCGUCGuCGCCg- -3'
miRNA:   3'- -GCCG----CGGG---------CGAGCAGCAGCuGUGGga -5'
26283 3' -61.8 NC_005345.2 + 45714 0.66 0.373515
Target:  5'- uCGGgGCCCGCaUCGcCGccCGccgccGCGCCCg -3'
miRNA:   3'- -GCCgCGGGCG-AGCaGCa-GC-----UGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 15847 0.66 0.372678
Target:  5'- gCGG-GCCCGCUCG-CGgugggcgagcagcUCGGCGCUUg -3'
miRNA:   3'- -GCCgCGGGCGAGCaGC-------------AGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 26796 0.66 0.371009
Target:  5'- cCGGCGCCgcgucgcaggcgcUGCUCGcCGcaucacugcugcCGGCACCCg -3'
miRNA:   3'- -GCCGCGG-------------GCGAGCaGCa-----------GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 18217 0.66 0.365206
Target:  5'- gGGCGCCgCGUUCGg-GUaCGGgcuCGCCCUg -3'
miRNA:   3'- gCCGCGG-GCGAGCagCA-GCU---GUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 43539 0.66 0.365206
Target:  5'- gCGGauCGCCgaGCUCGUCGcCGACaaGCUCg -3'
miRNA:   3'- -GCC--GCGGg-CGAGCAGCaGCUG--UGGGa -5'
26283 3' -61.8 NC_005345.2 + 14634 0.66 0.357026
Target:  5'- aGGCcgcgGCCCGCcucgaccgCGUCcUCGGCACCg- -3'
miRNA:   3'- gCCG----CGGGCGa-------GCAGcAGCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 19014 0.66 0.357026
Target:  5'- gCGGCGCC---UCGaCGUCGcCGCCCg -3'
miRNA:   3'- -GCCGCGGgcgAGCaGCAGCuGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.