miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26285 5' -59.9 NC_005345.2 + 41481 0.65 0.48448
Target:  5'- cGCugGGGGCuccccuucacagcGGCC--GCUCuGCCGCa -3'
miRNA:   3'- aCGugCCCUGu------------CUGGgcUGAG-CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 19150 0.66 0.478544
Target:  5'- gGC-CGGGACgucgucgccGGGCCCGuACg-GCUGCc -3'
miRNA:   3'- aCGuGCCCUG---------UCUGGGC-UGagCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 48700 0.66 0.478544
Target:  5'- gGgGCGGGuaugcgccACGGACCCGcccguACUaCGuCCGCc -3'
miRNA:   3'- aCgUGCCC--------UGUCUGGGC-----UGA-GC-GGCG- -5'
26285 5' -59.9 NC_005345.2 + 30087 0.66 0.478544
Target:  5'- aGCACGGccccgaGACGG-CCgGGUUCGCCGa -3'
miRNA:   3'- aCGUGCC------CUGUCuGGgCUGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 30255 0.66 0.478544
Target:  5'- -uCGCGGccgccgaGCAGGCCgGGCUCGUCGa -3'
miRNA:   3'- acGUGCCc------UGUCUGGgCUGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 1405 0.66 0.478544
Target:  5'- gUGaCGCGGGGCcagaGGAUCCc-CUCGUCGUc -3'
miRNA:   3'- -AC-GUGCCCUG----UCUGGGcuGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 31290 0.66 0.477558
Target:  5'- gUGCGCgccacgggGGGAUgucgccgGGGCCCGGCg-GCCGg -3'
miRNA:   3'- -ACGUG--------CCCUG-------UCUGGGCUGagCGGCg -5'
26285 5' -59.9 NC_005345.2 + 9350 0.66 0.475589
Target:  5'- cGCAUGGuGGCugcgggcGGCCgGGCUCgaccacuacgggcaGCCGCu -3'
miRNA:   3'- aCGUGCC-CUGu------CUGGgCUGAG--------------CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 45705 0.66 0.468731
Target:  5'- cGCGCGa-GCucgGGGCCCGcaUCGCCGCc -3'
miRNA:   3'- aCGUGCccUG---UCUGGGCugAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 9724 0.66 0.468731
Target:  5'- cGCGCcGcGCGGGCCgCGACcgCGCCGa -3'
miRNA:   3'- aCGUGcCcUGUCUGG-GCUGa-GCGGCg -5'
26285 5' -59.9 NC_005345.2 + 22335 0.66 0.468731
Target:  5'- cUGCACGuGugGGGgCgCGGgUCGCUGCc -3'
miRNA:   3'- -ACGUGCcCugUCUgG-GCUgAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 25074 0.66 0.468731
Target:  5'- gUGcCACGGccGGCcGA-UCGGCUCGCCGUa -3'
miRNA:   3'- -AC-GUGCC--CUGuCUgGGCUGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 17554 0.66 0.468731
Target:  5'- -cCGCGGGccgcgccgaGCAgGGCCCGGCagaGCUGCa -3'
miRNA:   3'- acGUGCCC---------UGU-CUGGGCUGag-CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 32834 0.66 0.468731
Target:  5'- cUGCGCGGGAguGAgCUCGGgaUGgUGCa -3'
miRNA:   3'- -ACGUGCCCUguCU-GGGCUgaGCgGCG- -5'
26285 5' -59.9 NC_005345.2 + 8418 0.66 0.468731
Target:  5'- aGUACGuaGGGCu-GCCCGGgUCGCUGUc -3'
miRNA:   3'- aCGUGC--CCUGucUGGGCUgAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 21156 0.66 0.468731
Target:  5'- gUGCuuGCGGGACAGcGCCUuguACuUCGCgGCc -3'
miRNA:   3'- -ACG--UGCCCUGUC-UGGGc--UG-AGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 14821 0.66 0.459022
Target:  5'- gGCGCGGGuguGGucgacGCCCGagcaGCUUGCCGg -3'
miRNA:   3'- aCGUGCCCug-UC-----UGGGC----UGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 33643 0.66 0.459022
Target:  5'- aGCA--GGACAagagcaacGCCCGACUUGCgGCg -3'
miRNA:   3'- aCGUgcCCUGUc-------UGGGCUGAGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 15614 0.66 0.459022
Target:  5'- aGCGuCGucaGCAuGCCgCGGCUCGCCGCc -3'
miRNA:   3'- aCGU-GCcc-UGUcUGG-GCUGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 3243 0.66 0.459022
Target:  5'- gGCA-GGcGAguGACaaCCGuCUCGCCGUg -3'
miRNA:   3'- aCGUgCC-CUguCUG--GGCuGAGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.