miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26286 5' -60.8 NC_005345.2 + 30048 0.65 0.434751
Target:  5'- aCGCguGGGccgacgacaccgacGGCGAGCucaucggcgaGCAcGGCCCCg -3'
miRNA:   3'- gGCGguCUC--------------UCGCUCG----------CGUcUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 18802 0.66 0.42824
Target:  5'- aCCGCCGGGGuuGCcGGgGCAcuuGGGUUCCu -3'
miRNA:   3'- -GGCGGUCUCu-CGcUCgCGU---CUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 33892 0.66 0.42824
Target:  5'- cCCGCCGacGuGAGgGGGUG-GGAGCUCUg -3'
miRNA:   3'- -GGCGGU--CuCUCgCUCGCgUCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 48564 0.66 0.42824
Target:  5'- gCGUCGcGGAuGCGGGCGCcgauGAGCUCg -3'
miRNA:   3'- gGCGGUcUCU-CGCUCGCGu---CUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 30916 0.66 0.42824
Target:  5'- gCaCCGGgaccAGGGCGAGCccgacccgaacGCGGcGCCCCa -3'
miRNA:   3'- gGcGGUC----UCUCGCUCG-----------CGUCuCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 12151 0.66 0.40996
Target:  5'- aUGCCgAGGGAGCu-GCGCacGGGGCUCg -3'
miRNA:   3'- gGCGG-UCUCUCGcuCGCG--UCUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 36531 0.66 0.40996
Target:  5'- gCGUgGGuGGGCGAaCGC--GGCCCCg -3'
miRNA:   3'- gGCGgUCuCUCGCUcGCGucUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 3170 0.66 0.40996
Target:  5'- cUCGUCGGGGuGcCGGGUcgGC-GAGCCCUg -3'
miRNA:   3'- -GGCGGUCUCuC-GCUCG--CGuCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 1767 0.66 0.40996
Target:  5'- aCCGUCGGccauGGGgGAGgGCAG-GCCgCu -3'
miRNA:   3'- -GGCGGUCu---CUCgCUCgCGUCuCGGgG- -5'
26286 5' -60.8 NC_005345.2 + 35282 0.66 0.40726
Target:  5'- gCCGgCGGAGcGagcuguacuuguccGCGAGCGUGGGGaCCCg -3'
miRNA:   3'- -GGCgGUCUC-U--------------CGCUCGCGUCUCgGGG- -5'
26286 5' -60.8 NC_005345.2 + 23361 0.66 0.401004
Target:  5'- gCGCUGG-GAGCGGGC-CGaGGCgCCCg -3'
miRNA:   3'- gGCGGUCuCUCGCUCGcGUcUCG-GGG- -5'
26286 5' -60.8 NC_005345.2 + 14894 0.66 0.401004
Target:  5'- gCCGaggCGGAGcAGCGGGCGaagcGGGCCgCg -3'
miRNA:   3'- -GGCg--GUCUC-UCGCUCGCgu--CUCGGgG- -5'
26286 5' -60.8 NC_005345.2 + 21771 0.66 0.401004
Target:  5'- cUCGCUGGcGGGCGAGC-CGGGGUCg- -3'
miRNA:   3'- -GGCGGUCuCUCGCUCGcGUCUCGGgg -5'
26286 5' -60.8 NC_005345.2 + 35932 0.66 0.401004
Target:  5'- aCGCCGGGGcGCGGggugugcucgccGCGCGGGcuGCCgCu -3'
miRNA:   3'- gGCGGUCUCuCGCU------------CGCGUCU--CGGgG- -5'
26286 5' -60.8 NC_005345.2 + 3431 0.66 0.401004
Target:  5'- gCGgCGGcGGGCG-GCGaugcGGGCCCCg -3'
miRNA:   3'- gGCgGUCuCUCGCuCGCgu--CUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 8773 0.66 0.401004
Target:  5'- gCUGCgCAG-GA-UGAGCGCGGugaucGCCCCc -3'
miRNA:   3'- -GGCG-GUCuCUcGCUCGCGUCu----CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 26366 0.66 0.400115
Target:  5'- gCGUCGGAGGGUGAGaacaCGCAGuucgggcAGCUCg -3'
miRNA:   3'- gGCGGUCUCUCGCUC----GCGUC-------UCGGGg -5'
26286 5' -60.8 NC_005345.2 + 29692 0.66 0.392174
Target:  5'- aCGCCGGcGAacGCGAucGCGCugcugcccGAGCCCg -3'
miRNA:   3'- gGCGGUCuCU--CGCU--CGCGu-------CUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 16213 0.66 0.392174
Target:  5'- uCCGUCAGGaGGUGGGCGa--GGCCuCCg -3'
miRNA:   3'- -GGCGGUCUcUCGCUCGCgucUCGG-GG- -5'
26286 5' -60.8 NC_005345.2 + 18799 0.66 0.383471
Target:  5'- gCCGUCGGgcAGGGUGAcggcgGCGCGG-GCCUg -3'
miRNA:   3'- -GGCGGUC--UCUCGCU-----CGCGUCuCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.