miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 5' -54.5 NC_005345.2 + 19817 0.66 0.770647
Target:  5'- cGGUCugC---UGCAGCUCGgu-GACCg -3'
miRNA:   3'- -CCAGugGcccACGUCGAGCaucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 26102 0.66 0.760433
Target:  5'- aGGcgUACCGGGUGUucgcuAGCgUCGaggGGGAUCu -3'
miRNA:   3'- -CCa-GUGGCCCACG-----UCG-AGCa--UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 4269 0.66 0.760433
Target:  5'- --aCACCGGcGgugcggGCAGCUCGggcucGGGCUg -3'
miRNA:   3'- ccaGUGGCC-Ca-----CGUCGAGCau---CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 35684 0.66 0.760433
Target:  5'- aGGUCGCCGGGUucgucggucuggGCAaGCUgccGGAcgcGCCg -3'
miRNA:   3'- -CCAGUGGCCCA------------CGU-CGAgcaUCU---UGG- -5'
26287 5' -54.5 NC_005345.2 + 18246 0.66 0.760433
Target:  5'- uGGUC-CC-GGUGCuGCUCGcc-GGCCg -3'
miRNA:   3'- -CCAGuGGcCCACGuCGAGCaucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 45126 0.66 0.753203
Target:  5'- cGUCGCacaggggCGGGacaacgcggacgcgcUGCGGCUCGUccGACCg -3'
miRNA:   3'- cCAGUG-------GCCC---------------ACGUCGAGCAucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 27880 0.66 0.750085
Target:  5'- aGGUCccgGCCGGGUucgacguaCAGCUCGgcGAcGCg -3'
miRNA:   3'- -CCAG---UGGCCCAc-------GUCGAGCauCU-UGg -5'
26287 5' -54.5 NC_005345.2 + 33316 0.66 0.750085
Target:  5'- --cCugCGcGGUGUAGCUCGg---GCCg -3'
miRNA:   3'- ccaGugGC-CCACGUCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 3474 0.66 0.750085
Target:  5'- cGGUCGcgauCCGGGUGCAcuGCccggUCGUcgcaggcgAGGACg -3'
miRNA:   3'- -CCAGU----GGCCCACGU--CG----AGCA--------UCUUGg -5'
26287 5' -54.5 NC_005345.2 + 11113 0.66 0.750085
Target:  5'- gGGUCGCCGc--GCAGCUCaccgacgggcuuGUgccGGGGCCg -3'
miRNA:   3'- -CCAGUGGCccaCGUCGAG------------CA---UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 18842 0.66 0.739617
Target:  5'- uGGUCAaCGGGgcagGCgAGCagGUGcGGGCCg -3'
miRNA:   3'- -CCAGUgGCCCa---CG-UCGagCAU-CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 23587 0.66 0.733283
Target:  5'- cGG-CugCGGGUcGCGGCguucggcgcgacgcCGgcGGACCg -3'
miRNA:   3'- -CCaGugGCCCA-CGUCGa-------------GCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 31192 0.66 0.72904
Target:  5'- cGGgcgCGgCGGGUGCGGCggGUGcGcACCc -3'
miRNA:   3'- -CCa--GUgGCCCACGUCGagCAU-CuUGG- -5'
26287 5' -54.5 NC_005345.2 + 2799 0.66 0.72904
Target:  5'- cGG-CGCCGGcGUGC-GCUCG-AucGCCu -3'
miRNA:   3'- -CCaGUGGCC-CACGuCGAGCaUcuUGG- -5'
26287 5' -54.5 NC_005345.2 + 29333 0.66 0.72904
Target:  5'- cGGUCACCGaGcUGCAGCagacCGUcGAcuucgGCCg -3'
miRNA:   3'- -CCAGUGGC-CcACGUCGa---GCAuCU-----UGG- -5'
26287 5' -54.5 NC_005345.2 + 35249 0.66 0.72904
Target:  5'- cGUCGauGGGcgGCAGUUCGgugaugguccGGAGCCg -3'
miRNA:   3'- cCAGUggCCCa-CGUCGAGCa---------UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 8949 0.66 0.72904
Target:  5'- cGGgCugCGGGUGCucgGGCUCG----ACCu -3'
miRNA:   3'- -CCaGugGCCCACG---UCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 6005 0.66 0.718365
Target:  5'- --gUugCGGGUGCAGUUcuccggccggcCGUuGGGCCa -3'
miRNA:   3'- ccaGugGCCCACGUCGA-----------GCAuCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 13486 0.67 0.707604
Target:  5'- cGG-CACCGcgucGGUGCGGUggcgCGgcGAGCa -3'
miRNA:   3'- -CCaGUGGC----CCACGUCGa---GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 33033 0.67 0.707604
Target:  5'- cGGcCGCgGGGUGCgguccGGCUCGacguuGGGCUc -3'
miRNA:   3'- -CCaGUGgCCCACG-----UCGAGCau---CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.