miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 5' -62.6 NC_005345.2 + 28757 0.65 0.346304
Target:  5'- uACGGCGGGgccggcucggugacGGUcaugaggcgcaugaCGCGuCCCCGUCGCu -3'
miRNA:   3'- -UGCCGCCU--------------UCAug------------GCGC-GGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 34516 0.66 0.339945
Target:  5'- cGCGGUcGAGGcggGCCGCgGCCUCGCgGg -3'
miRNA:   3'- -UGCCGcCUUCa--UGGCG-CGGGGCGgUg -5'
26291 5' -62.6 NC_005345.2 + 20447 0.66 0.339945
Target:  5'- gUGGaaGAGGU-CCGCGCCCgaguaGCCAa -3'
miRNA:   3'- uGCCgcCUUCAuGGCGCGGGg----CGGUg -5'
26291 5' -62.6 NC_005345.2 + 38724 0.66 0.332116
Target:  5'- cGCGGUGGuuGUcGCgCGCGaCCUCGCacaGCg -3'
miRNA:   3'- -UGCCGCCuuCA-UG-GCGC-GGGGCGg--UG- -5'
26291 5' -62.6 NC_005345.2 + 8788 0.66 0.332116
Target:  5'- cGCGGUgaucgcccccacGGccGUACC-CGUcgCCCGCCACg -3'
miRNA:   3'- -UGCCG------------CCuuCAUGGcGCG--GGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 38997 0.66 0.332116
Target:  5'- uGCGGCGGgcGcuCCGCagagcgGCCgCCGCCu- -3'
miRNA:   3'- -UGCCGCCuuCauGGCG------CGG-GGCGGug -5'
26291 5' -62.6 NC_005345.2 + 21184 0.66 0.332116
Target:  5'- gACGGCGcaccgccguucGGGUucaCGCGCUCCGCCGa -3'
miRNA:   3'- -UGCCGCc----------UUCAug-GCGCGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 42147 0.66 0.332116
Target:  5'- cACGGUGGcgacgcUGCCugucgGCGCCCgGCCAg -3'
miRNA:   3'- -UGCCGCCuuc---AUGG-----CGCGGGgCGGUg -5'
26291 5' -62.6 NC_005345.2 + 268 0.66 0.327482
Target:  5'- uCGGCGGggGUcuucucguacACgGUagggcacgcagcaccGCCCCGCCc- -3'
miRNA:   3'- uGCCGCCuuCA----------UGgCG---------------CGGGGCGGug -5'
26291 5' -62.6 NC_005345.2 + 1337 0.66 0.32442
Target:  5'- cCGGcCGGGucgcGGUAaCGCG-CCUGCCACg -3'
miRNA:   3'- uGCC-GCCU----UCAUgGCGCgGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 7775 0.66 0.32442
Target:  5'- uCGGCGuccauGAGUccguugccgagcGCUGCGCCgCCGCCGg -3'
miRNA:   3'- uGCCGCc----UUCA------------UGGCGCGG-GGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 40677 0.66 0.322137
Target:  5'- cGCGGggagaaccccgaaaCGGGAGUcgcgACCGCGCCCgUGCUc- -3'
miRNA:   3'- -UGCC--------------GCCUUCA----UGGCGCGGG-GCGGug -5'
26291 5' -62.6 NC_005345.2 + 47897 0.66 0.316858
Target:  5'- uGCuGUGGucGUGCCGCaG-CCCGCCGg -3'
miRNA:   3'- -UGcCGCCuuCAUGGCG-CgGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 28809 0.66 0.316858
Target:  5'- cACGGCa-AGGUccgcACCGCGCgCCUGCC-Ca -3'
miRNA:   3'- -UGCCGccUUCA----UGGCGCG-GGGCGGuG- -5'
26291 5' -62.6 NC_005345.2 + 3433 0.66 0.316858
Target:  5'- gGCGGCGGgcGgcgAUgCGgGCCCCGagcuCGCg -3'
miRNA:   3'- -UGCCGCCuuCa--UG-GCgCGGGGCg---GUG- -5'
26291 5' -62.6 NC_005345.2 + 36748 0.66 0.309429
Target:  5'- uCGGCcGAc---UCGCGCCUCGCCGCu -3'
miRNA:   3'- uGCCGcCUucauGGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 13170 0.66 0.302134
Target:  5'- uCGGCGGAAGgacaaccgaugACCG-GCCCgaGCgGCa -3'
miRNA:   3'- uGCCGCCUUCa----------UGGCgCGGGg-CGgUG- -5'
26291 5' -62.6 NC_005345.2 + 11099 0.67 0.294972
Target:  5'- cACGGuCGGAAGUugggucGCCGCGCa--GCuCACc -3'
miRNA:   3'- -UGCC-GCCUUCA------UGGCGCGgggCG-GUG- -5'
26291 5' -62.6 NC_005345.2 + 14604 0.67 0.294972
Target:  5'- aGCGGCuccGGAucgacgGGUacgcccgcgagGCCGCGgCCCGCCuCg -3'
miRNA:   3'- -UGCCG---CCU------UCA-----------UGGCGCgGGGCGGuG- -5'
26291 5' -62.6 NC_005345.2 + 34157 0.67 0.294263
Target:  5'- gGCGGCGGccccgagGAGUgGCCcgGgGCCCCGaCCGa -3'
miRNA:   3'- -UGCCGCC-------UUCA-UGG--CgCGGGGC-GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.