miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 3' -54.9 NC_005345.2 + 24267 0.66 0.728978
Target:  5'- cCGACAGGCgGcAGccGAUCAgcGCGGUCGc -3'
miRNA:   3'- -GCUGUUCGgC-UCcuUUAGU--CGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 23296 0.66 0.728978
Target:  5'- cCGGCGccgaAGcCCGAGGGGcggaaGGCGcGCCGg -3'
miRNA:   3'- -GCUGU----UC-GGCUCCUUuag--UCGC-CGGC- -5'
26301 3' -54.9 NC_005345.2 + 46435 0.66 0.728978
Target:  5'- gGGCGGGC--GGGAGAcaUCGGCGccGCCGa -3'
miRNA:   3'- gCUGUUCGgcUCCUUU--AGUCGC--CGGC- -5'
26301 3' -54.9 NC_005345.2 + 40603 0.66 0.728978
Target:  5'- cCGGCGAGCaCGGGGuguaccucUCcGCGaGCCGc -3'
miRNA:   3'- -GCUGUUCG-GCUCCuuu-----AGuCGC-CGGC- -5'
26301 3' -54.9 NC_005345.2 + 29968 0.66 0.728978
Target:  5'- gGGCucgucGUCGAGGGGcucGUCGGCguccucGGCCGg -3'
miRNA:   3'- gCUGuu---CGGCUCCUU---UAGUCG------CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 11465 0.66 0.718256
Target:  5'- gCGGCccacGGCCGAcGAcAUCAG-GGCCGc -3'
miRNA:   3'- -GCUGu---UCGGCUcCUuUAGUCgCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 29476 0.66 0.718256
Target:  5'- gGGCAGucGCCGGGcGucAUCcucaugccgaaGGCGGCCGu -3'
miRNA:   3'- gCUGUU--CGGCUC-CuuUAG-----------UCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 35320 0.66 0.718256
Target:  5'- gCGcCGAGCUuccGGGcGAUCGgcGCGGCCGg -3'
miRNA:   3'- -GCuGUUCGGc--UCCuUUAGU--CGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 39765 0.66 0.718256
Target:  5'- uCGACGAcGgCGAGGAGG--AGUGGCgGg -3'
miRNA:   3'- -GCUGUU-CgGCUCCUUUagUCGCCGgC- -5'
26301 3' -54.9 NC_005345.2 + 36345 0.66 0.718256
Target:  5'- cCGGCGGGCCGAGcGGcUCgGGCgGGUCGu -3'
miRNA:   3'- -GCUGUUCGGCUCcUUuAG-UCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 9591 0.66 0.718256
Target:  5'- aCGACcGGCCG-GGAc--CGGCcgcggGGCCGg -3'
miRNA:   3'- -GCUGuUCGGCuCCUuuaGUCG-----CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 26638 0.66 0.717179
Target:  5'- gGACuacaccgAGGCCGAGGug--CGGUGGgCGa -3'
miRNA:   3'- gCUG-------UUCGGCUCCuuuaGUCGCCgGC- -5'
26301 3' -54.9 NC_005345.2 + 8398 0.66 0.717179
Target:  5'- cCGACGAGCCGcuGccGGUCGacggggcGCGGCUGg -3'
miRNA:   3'- -GCUGUUCGGCucCu-UUAGU-------CGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 27513 0.66 0.715023
Target:  5'- cCGAgccGCUGAGGAucgaucucccgcccGAUCAG-GGCCGg -3'
miRNA:   3'- -GCUguuCGGCUCCU--------------UUAGUCgCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 7364 0.66 0.707448
Target:  5'- uGGCGcAGCCGGGcGGG---GGUGGCCGc -3'
miRNA:   3'- gCUGU-UCGGCUC-CUUuagUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 46776 0.66 0.707448
Target:  5'- aCGGCGcGCgaCGGGGAGGUCA-CGcGCCGu -3'
miRNA:   3'- -GCUGUuCG--GCUCCUUUAGUcGC-CGGC- -5'
26301 3' -54.9 NC_005345.2 + 32694 0.66 0.707448
Target:  5'- uCGACA--CCGAGGGGgaacacAUCGGCGaaccaGCCGa -3'
miRNA:   3'- -GCUGUucGGCUCCUU------UAGUCGC-----CGGC- -5'
26301 3' -54.9 NC_005345.2 + 9693 0.66 0.707448
Target:  5'- -uGCAGGCCGA-----UCAGCgGGCCGc -3'
miRNA:   3'- gcUGUUCGGCUccuuuAGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 3817 0.66 0.707448
Target:  5'- gCGACGacGGUCGuccgcuGcGAGGUCGGCGGCg- -3'
miRNA:   3'- -GCUGU--UCGGCu-----C-CUUUAGUCGCCGgc -5'
26301 3' -54.9 NC_005345.2 + 34963 0.66 0.690005
Target:  5'- aCGACGcucaAGCCGGGGuucgacgggcucauGGUCggucugcgGGCGGUCGg -3'
miRNA:   3'- -GCUGU----UCGGCUCCu-------------UUAG--------UCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.