miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 45580 0.66 0.372583
Target:  5'- -cGGUUGCGgCCGGgGgCCGCgaacGGGUCg -3'
miRNA:   3'- gcCCAGCGCgGGCCgUaGGUG----UCCAG- -5'
26319 3' -62.1 NC_005345.2 + 9949 0.66 0.372583
Target:  5'- -cGGUCGCcaacccgcgGCCCGGguUCgggCugGGGUCc -3'
miRNA:   3'- gcCCAGCG---------CGGGCCguAG---GugUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 36378 0.66 0.372583
Target:  5'- gCGGG-CGCGCUCcGCggCCGCGGcGUg -3'
miRNA:   3'- -GCCCaGCGCGGGcCGuaGGUGUC-CAg -5'
26319 3' -62.1 NC_005345.2 + 30214 0.66 0.371741
Target:  5'- cCGGGcgacgaUCGCGCauCCGGCGgugagCCggucgacgacgguGCGGGUCc -3'
miRNA:   3'- -GCCC------AGCGCG--GGCCGUa----GG-------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 16189 0.66 0.364227
Target:  5'- aCGcGGaCGCGgCCGGCGUCCGCc--UCg -3'
miRNA:   3'- -GC-CCaGCGCgGGCCGUAGGUGuccAG- -5'
26319 3' -62.1 NC_005345.2 + 32555 0.66 0.364227
Target:  5'- gGGGUCGgGCCaCGcCA-CCGCAGcGUUg -3'
miRNA:   3'- gCCCAGCgCGG-GCcGUaGGUGUC-CAG- -5'
26319 3' -62.1 NC_005345.2 + 38284 0.66 0.364227
Target:  5'- aCGGGaCGCGCCgcgugCGGCAguccgcccaCCGCAGcUCg -3'
miRNA:   3'- -GCCCaGCGCGG-----GCCGUa--------GGUGUCcAG- -5'
26319 3' -62.1 NC_005345.2 + 29383 0.66 0.364227
Target:  5'- uCGGuGUCGUacgGCUCGGCcgCCGCcucggccucGGUCg -3'
miRNA:   3'- -GCC-CAGCG---CGGGCCGuaGGUGu--------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 39789 0.66 0.356001
Target:  5'- aGuGGUCGaGCCCGGCcgcCCGCAGccaccaugcGUCg -3'
miRNA:   3'- gC-CCAGCgCGGGCCGua-GGUGUC---------CAG- -5'
26319 3' -62.1 NC_005345.2 + 45198 0.66 0.345504
Target:  5'- gGGGUCGCcucgacguacagacGCCCGGU---CACGGGg- -3'
miRNA:   3'- gCCCAGCG--------------CGGGCCGuagGUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 4775 0.66 0.339945
Target:  5'- uGGGccCGUGCCUuuccgGGCucgCCGCGGGUg -3'
miRNA:   3'- gCCCa-GCGCGGG-----CCGua-GGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 11134 0.66 0.339945
Target:  5'- aCGGGcUUGUGCCgGGg--CCGguGGUCa -3'
miRNA:   3'- -GCCC-AGCGCGGgCCguaGGUguCCAG- -5'
26319 3' -62.1 NC_005345.2 + 17372 0.66 0.339156
Target:  5'- uCGGGcUCGUaCUCGGUgccguccgcggugGUCCGCGGGUa -3'
miRNA:   3'- -GCCC-AGCGcGGGCCG-------------UAGGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 8497 0.66 0.332116
Target:  5'- -aGGaCGUGUUCGGCGUCCACuGG-Ca -3'
miRNA:   3'- gcCCaGCGCGGGCCGUAGGUGuCCaG- -5'
26319 3' -62.1 NC_005345.2 + 21027 0.66 0.33134
Target:  5'- cCGGGUgcguuccucggcaCGCGCgCCGGCGaCCGCcucGUCg -3'
miRNA:   3'- -GCCCA-------------GCGCG-GGCCGUaGGUGuc-CAG- -5'
26319 3' -62.1 NC_005345.2 + 31221 0.66 0.32442
Target:  5'- cCGGGUgCG-GCCgGGUGUaCgGCGGGUCc -3'
miRNA:   3'- -GCCCA-GCgCGGgCCGUA-GgUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 1189 0.66 0.32442
Target:  5'- aCGGG-CG-GCUCGGCAguccggcCCGCGGGcCa -3'
miRNA:   3'- -GCCCaGCgCGGGCCGUa------GGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 23570 0.67 0.316858
Target:  5'- -cGGcCGCGUCCGaGCugcggCUGCGGGUCg -3'
miRNA:   3'- gcCCaGCGCGGGC-CGua---GGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 27034 0.67 0.309429
Target:  5'- uCGGGUCGUGCCggucguugUGGCca-CGCAGG-Cg -3'
miRNA:   3'- -GCCCAGCGCGG--------GCCGuagGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 33317 0.67 0.309429
Target:  5'- gCGGGccCGCGCCCauc-UCCACGcGGUCg -3'
miRNA:   3'- -GCCCa-GCGCGGGccguAGGUGU-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.