miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 5' -58.8 NC_005345.2 + 15702 0.66 0.462979
Target:  5'- cCGCAGGUggugacacaccuUGCGGGCCGCccgccacccugcUGUGAaCAg -3'
miRNA:   3'- cGCGUCCG------------ACGUCUGGCG------------ACACUcGU- -5'
26320 5' -58.8 NC_005345.2 + 9353 0.66 0.453056
Target:  5'- aUGguGGCUGCGGGCgGCc--GGGCu -3'
miRNA:   3'- cGCguCCGACGUCUGgCGacaCUCGu -5'
26320 5' -58.8 NC_005345.2 + 10297 0.66 0.433566
Target:  5'- gGCGCGGGCUGUGGgaGCgGCccGgcacGAGCGu -3'
miRNA:   3'- -CGCGUCCGACGUC--UGgCGa-Ca---CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 30193 0.66 0.433566
Target:  5'- gGCG-AGcGCUuCGGACCGCUGccGGGCGa -3'
miRNA:   3'- -CGCgUC-CGAcGUCUGGCGACa-CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 44078 0.66 0.433566
Target:  5'- aGCGCcgauGGGCUGCAG-CUGCUcacAGCGg -3'
miRNA:   3'- -CGCG----UCCGACGUCuGGCGAcacUCGU- -5'
26320 5' -58.8 NC_005345.2 + 15768 0.66 0.433566
Target:  5'- cCGC-GGCUGUAGccauguGCCGCccucccguccggUGUGGGCGg -3'
miRNA:   3'- cGCGuCCGACGUC------UGGCG------------ACACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 5330 0.66 0.433566
Target:  5'- gGCGaAGcGCUGCAGugCGgUgccGUGGGCGc -3'
miRNA:   3'- -CGCgUC-CGACGUCugGCgA---CACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 23244 0.67 0.414571
Target:  5'- cGCGCgAGGCcucGCAGGCCGagaagggGGGCGa -3'
miRNA:   3'- -CGCG-UCCGa--CGUCUGGCgaca---CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 8044 0.67 0.414571
Target:  5'- cGCGCAGcugcacgaGCUGCAGaucaagcucGCCGCc--GAGCAg -3'
miRNA:   3'- -CGCGUC--------CGACGUC---------UGGCGacaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 26773 0.67 0.405268
Target:  5'- gGCGCGGGUgcgGCGGAUCGUggccGGCGc -3'
miRNA:   3'- -CGCGUCCGa--CGUCUGGCGacacUCGU- -5'
26320 5' -58.8 NC_005345.2 + 27140 0.67 0.405268
Target:  5'- -gGCGGGCccgGCAuGCCGCcGUGcGGCAg -3'
miRNA:   3'- cgCGUCCGa--CGUcUGGCGaCAC-UCGU- -5'
26320 5' -58.8 NC_005345.2 + 37914 0.67 0.396097
Target:  5'- uCGCGGGCUGCGGcAgCGC---GGGCAg -3'
miRNA:   3'- cGCGUCCGACGUC-UgGCGacaCUCGU- -5'
26320 5' -58.8 NC_005345.2 + 3332 0.67 0.387959
Target:  5'- gGCGUcacucGGGCUGCGGgcGCCGCguucgaucgcgcgGAGCAu -3'
miRNA:   3'- -CGCG-----UCCGACGUC--UGGCGaca----------CUCGU- -5'
26320 5' -58.8 NC_005345.2 + 21389 0.67 0.387061
Target:  5'- uGCGCGGGUgacgggGCAGAgUGC-GUGcaGGCAu -3'
miRNA:   3'- -CGCGUCCGa-----CGUCUgGCGaCAC--UCGU- -5'
26320 5' -58.8 NC_005345.2 + 15832 0.67 0.387061
Target:  5'- cGCGUggagauGGGC-GCGGGcCCGCUcgcgGUGGGCGa -3'
miRNA:   3'- -CGCG------UCCGaCGUCU-GGCGA----CACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 11492 0.67 0.386165
Target:  5'- cGCGCAGGCgGCccgcaccgacgccGGACUGCaGccgcucacgaaUGAGCAa -3'
miRNA:   3'- -CGCGUCCGaCG-------------UCUGGCGaC-----------ACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 23360 0.67 0.384377
Target:  5'- uGCGCuGGgaGCGGGCCgaggcgcccgaGCUGcccgacuuccgcauUGAGCAg -3'
miRNA:   3'- -CGCGuCCgaCGUCUGG-----------CGAC--------------ACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 26617 0.67 0.381705
Target:  5'- gGCGCAGGCcggugUGCccgaggacuacaccgAGGCCGaggugcgGUGGGCGa -3'
miRNA:   3'- -CGCGUCCG-----ACG---------------UCUGGCga-----CACUCGU- -5'
26320 5' -58.8 NC_005345.2 + 9161 0.67 0.378162
Target:  5'- gGCGCGGGUgcaCGGGCCGgUcGUGuGCGa -3'
miRNA:   3'- -CGCGUCCGac-GUCUGGCgA-CACuCGU- -5'
26320 5' -58.8 NC_005345.2 + 18782 0.67 0.378162
Target:  5'- uGCGCccGCcGCGGGCUGCcGUcGGGCAg -3'
miRNA:   3'- -CGCGucCGaCGUCUGGCGaCA-CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.