miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26356 5' -66.2 NC_005345.2 + 17975 0.66 0.232816
Target:  5'- uGCCGgGCCGCgGCCUCgAucuCCCgUgUCg -3'
miRNA:   3'- -CGGCgCGGUGgCGGGGgU---GGGgAgAG- -5'
26356 5' -66.2 NC_005345.2 + 40770 0.66 0.232816
Target:  5'- gGCCGCcgGCCGCgGUUCCaCACCUCgccgacaCUCa -3'
miRNA:   3'- -CGGCG--CGGUGgCGGGG-GUGGGGa------GAG- -5'
26356 5' -66.2 NC_005345.2 + 19019 0.66 0.232816
Target:  5'- uGgCGCGCCGCCcucggGCCgCUGCUCCgcCUCg -3'
miRNA:   3'- -CgGCGCGGUGG-----CGGgGGUGGGGa-GAG- -5'
26356 5' -66.2 NC_005345.2 + 23601 0.66 0.22716
Target:  5'- aGuaGCGCCACCacucgucgagcuGCCCCUGCCgCUUa- -3'
miRNA:   3'- -CggCGCGGUGG------------CGGGGGUGGgGAGag -5'
26356 5' -66.2 NC_005345.2 + 14520 0.66 0.22716
Target:  5'- aGCaGCG-CACCGCCCCgACCgCCgcacgcuggCUCc -3'
miRNA:   3'- -CGgCGCgGUGGCGGGGgUGG-GGa--------GAG- -5'
26356 5' -66.2 NC_005345.2 + 33024 0.66 0.22716
Target:  5'- cGCCGggaCGCCGCCGgCCggCCGCUgCUCa- -3'
miRNA:   3'- -CGGC---GCGGUGGCgGG--GGUGGgGAGag -5'
26356 5' -66.2 NC_005345.2 + 36446 0.66 0.22716
Target:  5'- -aCGgGCugCAUCGCCCaCCACCgccaCUCUCg -3'
miRNA:   3'- cgGCgCG--GUGGCGGG-GGUGGg---GAGAG- -5'
26356 5' -66.2 NC_005345.2 + 28290 0.66 0.22716
Target:  5'- -gCGCGCUACC--UCCCGCaCUCUCUCc -3'
miRNA:   3'- cgGCGCGGUGGcgGGGGUG-GGGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 11572 0.66 0.22716
Target:  5'- cGCC-CGCCugcagcCCGCCUgCGCCCgC-CUCg -3'
miRNA:   3'- -CGGcGCGGu-----GGCGGGgGUGGG-GaGAG- -5'
26356 5' -66.2 NC_005345.2 + 453 0.66 0.221621
Target:  5'- uCCGUGgCGCaua-CCCGCCCCUUUCa -3'
miRNA:   3'- cGGCGCgGUGgcggGGGUGGGGAGAG- -5'
26356 5' -66.2 NC_005345.2 + 11178 0.66 0.221621
Target:  5'- cGCCGCgucgaGCCACCGgaUCCCgAUCCgCUCg- -3'
miRNA:   3'- -CGGCG-----CGGUGGC--GGGGgUGGG-GAGag -5'
26356 5' -66.2 NC_005345.2 + 245 0.66 0.221621
Target:  5'- cUCGggaGCCAUCGCCgCCCGCaCCUUCg- -3'
miRNA:   3'- cGGCg--CGGUGGCGG-GGGUG-GGGAGag -5'
26356 5' -66.2 NC_005345.2 + 21946 0.66 0.212998
Target:  5'- cGCUGCGCCgACCGCUgccgaucacggCCCGCgCCgaugcccgguacugCUCg -3'
miRNA:   3'- -CGGCGCGG-UGGCGG-----------GGGUGgGGa-------------GAG- -5'
26356 5' -66.2 NC_005345.2 + 3571 0.66 0.210888
Target:  5'- uUCGCgGCCcccgGCCGCaaccggCCCGCCCCgacCUCg -3'
miRNA:   3'- cGGCG-CGG----UGGCGg-----GGGUGGGGa--GAG- -5'
26356 5' -66.2 NC_005345.2 + 41604 0.66 0.205691
Target:  5'- uGCCGUG-CACgGCCgUCGCaCCCUCg- -3'
miRNA:   3'- -CGGCGCgGUGgCGGgGGUG-GGGAGag -5'
26356 5' -66.2 NC_005345.2 + 3024 0.66 0.205691
Target:  5'- uCCGagGCCGCCGCUUCgACCCCg--- -3'
miRNA:   3'- cGGCg-CGGUGGCGGGGgUGGGGagag -5'
26356 5' -66.2 NC_005345.2 + 33599 0.66 0.205691
Target:  5'- cGCCgGUGCCGCCGUguuCUCCGCCgCgUUCg -3'
miRNA:   3'- -CGG-CGCGGUGGCG---GGGGUGGgGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 46234 0.66 0.205691
Target:  5'- cGuuGgGCCGCUGCCCgguCCGCCgauCCgCUCg -3'
miRNA:   3'- -CggCgCGGUGGCGGG---GGUGG---GGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 7801 0.66 0.205691
Target:  5'- cGCUGCGCCGCCGCCggaCGCCgUg--- -3'
miRNA:   3'- -CGGCGCGGUGGCGGgg-GUGGgGagag -5'
26356 5' -66.2 NC_005345.2 + 10591 0.66 0.202119
Target:  5'- cGCCGUGCCggugggcgcguacGCCGagaCCuucugucgguacgggCCCACCCCggggCUCg -3'
miRNA:   3'- -CGGCGCGG-------------UGGC---GG---------------GGGUGGGGa---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.