miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26358 3' -58 NC_005345.2 + 33149 0.66 0.571668
Target:  5'- --cGAGCAC-CUGCUCGCGAugaaccUCGaCGc -3'
miRNA:   3'- cgaCUCGUGcGACGGGCGCU------AGCaGC- -5'
26358 3' -58 NC_005345.2 + 35069 0.66 0.571668
Target:  5'- uCUGgacGGC-CGCgaaggucuUGUUCGCGAUCGUCGu -3'
miRNA:   3'- cGAC---UCGuGCG--------ACGGGCGCUAGCAGC- -5'
26358 3' -58 NC_005345.2 + 7587 0.66 0.571668
Target:  5'- cGC-GAGCACgGCgaGCgCGCGcacgacGUCGUCGa -3'
miRNA:   3'- -CGaCUCGUG-CGa-CGgGCGC------UAGCAGC- -5'
26358 3' -58 NC_005345.2 + 32560 0.66 0.560982
Target:  5'- --cGGGCcacgccaccgcaGCGUUGaaCGCGAUCGUCGc -3'
miRNA:   3'- cgaCUCG------------UGCGACggGCGCUAGCAGC- -5'
26358 3' -58 NC_005345.2 + 36106 0.66 0.560982
Target:  5'- --cGAuGC-CGCUGCCgGUGAUCcgGUCGc -3'
miRNA:   3'- cgaCU-CGuGCGACGGgCGCUAG--CAGC- -5'
26358 3' -58 NC_005345.2 + 20508 0.66 0.560982
Target:  5'- --gGGGCuuucCGCUGcCCCGgGAUCGgccugCGg -3'
miRNA:   3'- cgaCUCGu---GCGAC-GGGCgCUAGCa----GC- -5'
26358 3' -58 NC_005345.2 + 6587 0.66 0.560982
Target:  5'- --cGGGCAguuCGCUGCUCGuCGAcucgUGUCGg -3'
miRNA:   3'- cgaCUCGU---GCGACGGGC-GCUa---GCAGC- -5'
26358 3' -58 NC_005345.2 + 11221 0.66 0.539783
Target:  5'- gGCaUGGGCAUGaCUGCCCGCGcugccCG-Ca -3'
miRNA:   3'- -CG-ACUCGUGC-GACGGGCGCua---GCaGc -5'
26358 3' -58 NC_005345.2 + 10697 0.66 0.539783
Target:  5'- cGCUGuGCcCGgcCUGuCCUGCGGcagcUCGUCGg -3'
miRNA:   3'- -CGACuCGuGC--GAC-GGGCGCU----AGCAGC- -5'
26358 3' -58 NC_005345.2 + 12708 0.66 0.539783
Target:  5'- uGgUGGGCgAUGCaGCCCGUGuucgcCGUCGa -3'
miRNA:   3'- -CgACUCG-UGCGaCGGGCGCua---GCAGC- -5'
26358 3' -58 NC_005345.2 + 30590 0.66 0.539783
Target:  5'- cGCUGGGCGCGCa-CCCgGCGAgCGcCc -3'
miRNA:   3'- -CGACUCGUGCGacGGG-CGCUaGCaGc -5'
26358 3' -58 NC_005345.2 + 24570 0.66 0.539783
Target:  5'- uGCUGucgccGUACGCguaccgcagGCCgGCGAcgagcgacugcUCGUCGg -3'
miRNA:   3'- -CGACu----CGUGCGa--------CGGgCGCU-----------AGCAGC- -5'
26358 3' -58 NC_005345.2 + 12315 0.66 0.529285
Target:  5'- --cGAGUGCGCgGCgCCGauCGGUCGUCc -3'
miRNA:   3'- cgaCUCGUGCGaCG-GGC--GCUAGCAGc -5'
26358 3' -58 NC_005345.2 + 15970 0.66 0.529285
Target:  5'- cGCUGccAGUugGCgaUGUgCGCGG-CGUCGa -3'
miRNA:   3'- -CGAC--UCGugCG--ACGgGCGCUaGCAGC- -5'
26358 3' -58 NC_005345.2 + 48984 0.66 0.518862
Target:  5'- cGCgugugggGAGCACGCcgGCCCGC--UCGg-- -3'
miRNA:   3'- -CGa------CUCGUGCGa-CGGGCGcuAGCagc -5'
26358 3' -58 NC_005345.2 + 48271 0.67 0.508522
Target:  5'- aCUGAugccgcccgaccGCGCGCagUGCgCGCuGAUCGUCa -3'
miRNA:   3'- cGACU------------CGUGCG--ACGgGCG-CUAGCAGc -5'
26358 3' -58 NC_005345.2 + 37430 0.67 0.508522
Target:  5'- aGUUG-GUACGCggcggcgGCCCGCuGGUCGgccgUCGa -3'
miRNA:   3'- -CGACuCGUGCGa------CGGGCG-CUAGC----AGC- -5'
26358 3' -58 NC_005345.2 + 29212 0.67 0.508522
Target:  5'- --aGGGCGCGCUG-CUGC--UCGUCGu -3'
miRNA:   3'- cgaCUCGUGCGACgGGCGcuAGCAGC- -5'
26358 3' -58 NC_005345.2 + 7335 0.67 0.488111
Target:  5'- cGCcGAgucGCACGCggugugGCCCGCGGUgG-CGc -3'
miRNA:   3'- -CGaCU---CGUGCGa-----CGGGCGCUAgCaGC- -5'
26358 3' -58 NC_005345.2 + 27926 0.67 0.488111
Target:  5'- cGCUuccGAGCGCGgUGCCuCGaGGUCGgCGg -3'
miRNA:   3'- -CGA---CUCGUGCgACGG-GCgCUAGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.