miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26364 3' -56.7 NC_005345.2 + 48590 0.66 0.612597
Target:  5'- gGCGAggACCCGUaCgACCUCGcGCCgGAu -3'
miRNA:   3'- -UGCU--UGGGCAcG-UGGAGCuUGGgCUu -5'
26364 3' -56.7 NC_005345.2 + 29045 0.66 0.612597
Target:  5'- aGCGAucggcACCCcuuGUGCgaacuacuGCCUCGGuguGCCCGGGg -3'
miRNA:   3'- -UGCU-----UGGG---CACG--------UGGAGCU---UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 42824 0.66 0.601587
Target:  5'- uACGAgacGCUCGUGCaguACUUCGGccggaACCCGGc -3'
miRNA:   3'- -UGCU---UGGGCACG---UGGAGCU-----UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 20881 0.66 0.601587
Target:  5'- cGCGAGCCCGcaaaGCGCaCUCacugcCCCGAu -3'
miRNA:   3'- -UGCUUGGGCa---CGUG-GAGcuu--GGGCUu -5'
26364 3' -56.7 NC_005345.2 + 23172 0.66 0.601587
Target:  5'- -aGAacACCCGggcGUACC-CGAACCCGu- -3'
miRNA:   3'- ugCU--UGGGCa--CGUGGaGCUUGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 4331 0.66 0.59719
Target:  5'- uGCGccccACCCGcgaGCACCUCGcgaagaaccccauGCCCGAGc -3'
miRNA:   3'- -UGCu---UGGGCa--CGUGGAGCu------------UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 31123 0.66 0.590604
Target:  5'- cACGggUUCGUaggugaugcGCACCUCGAucgcACUCGGGu -3'
miRNA:   3'- -UGCuuGGGCA---------CGUGGAGCU----UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 21619 0.66 0.590604
Target:  5'- cGCGGgugaucGCCgCGUGCGCCUCGGugagcagcuGCUCGu- -3'
miRNA:   3'- -UGCU------UGG-GCACGUGGAGCU---------UGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 2363 0.66 0.590604
Target:  5'- gGCGcAGCCCGgucGCgACCUCGcgGGCCCa-- -3'
miRNA:   3'- -UGC-UUGGGCa--CG-UGGAGC--UUGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 30264 0.66 0.590603
Target:  5'- cCGAGCaggCCGgGCuCgUCGAGCCCGAGc -3'
miRNA:   3'- uGCUUG---GGCaCGuGgAGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 8589 0.66 0.590603
Target:  5'- gACGuGAUCCGU--GCCUCGGucgGCCCGAu -3'
miRNA:   3'- -UGC-UUGGGCAcgUGGAGCU---UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 1827 0.66 0.590603
Target:  5'- uGCGAccACUcugCGUGCACCaaGuGCCCGAGg -3'
miRNA:   3'- -UGCU--UGG---GCACGUGGagCuUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 34716 0.66 0.579656
Target:  5'- aGCGAGCagaGcGCgACCUCGAucGCCCGGc -3'
miRNA:   3'- -UGCUUGgg-CaCG-UGGAGCU--UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 24309 0.66 0.579656
Target:  5'- cGCGGGaCCGcuUGCgcgaGCCgUCGAACCCGAGc -3'
miRNA:   3'- -UGCUUgGGC--ACG----UGG-AGCUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 17314 0.66 0.579656
Target:  5'- gGCGAACCCGUccuugaccaGCuGCCUCGc-CUCGAc -3'
miRNA:   3'- -UGCUUGGGCA---------CG-UGGAGCuuGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 44517 0.66 0.579655
Target:  5'- gGCGAcgGCCCG-GaUAUCgagCGAACCCGGg -3'
miRNA:   3'- -UGCU--UGGGCaC-GUGGa--GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17698 0.66 0.579655
Target:  5'- cCGcacCCCG-GCGCCUCGcACCCGc- -3'
miRNA:   3'- uGCuu-GGGCaCGUGGAGCuUGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 2041 0.66 0.579655
Target:  5'- aGCGGGCCCGgcgcgGC-CCggCGGGCCgCGGc -3'
miRNA:   3'- -UGCUUGGGCa----CGuGGa-GCUUGG-GCUu -5'
26364 3' -56.7 NC_005345.2 + 7261 0.66 0.579655
Target:  5'- gACGAGCa---GCugCUCGAcaGCCCGGAc -3'
miRNA:   3'- -UGCUUGggcaCGugGAGCU--UGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 42649 0.66 0.568751
Target:  5'- uCGAGCCC-UGCggcguccacGCCUCGGGCUCGc- -3'
miRNA:   3'- uGCUUGGGcACG---------UGGAGCUUGGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.