miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 5' -49.3 NC_005345.2 + 45346 0.66 0.967803
Target:  5'- aCCGUCGucGCaCCGGuGUGGAccgugCGGCg -3'
miRNA:   3'- -GGCAGCu-UG-GGUUuCACUUcua--GCCG- -5'
26366 5' -49.3 NC_005345.2 + 17064 0.66 0.967803
Target:  5'- -gGUCGAACCCGagcccgaggccGAGcccGAGGUCGaGCc -3'
miRNA:   3'- ggCAGCUUGGGU-----------UUCac-UUCUAGC-CG- -5'
26366 5' -49.3 NC_005345.2 + 4366 0.66 0.967803
Target:  5'- gCGggCGGGCCgCucGGUGggGGugUCGGUc -3'
miRNA:   3'- gGCa-GCUUGG-GuuUCACuuCU--AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 4153 0.66 0.964253
Target:  5'- cUCGUCGAGC---GGGUGucGAcgCGGCa -3'
miRNA:   3'- -GGCAGCUUGgguUUCACuuCUa-GCCG- -5'
26366 5' -49.3 NC_005345.2 + 36989 0.66 0.964253
Target:  5'- uUGUCGAACCUGucGAGUacGGGcUCGGUc -3'
miRNA:   3'- gGCAGCUUGGGU--UUCAcuUCU-AGCCG- -5'
26366 5' -49.3 NC_005345.2 + 1470 0.66 0.961996
Target:  5'- gCCGUCGGccgugaugcggagcgGCCCGcGGUGGAcccgcuGAUCuGCc -3'
miRNA:   3'- -GGCAGCU---------------UGGGUuUCACUU------CUAGcCG- -5'
26366 5' -49.3 NC_005345.2 + 14316 0.66 0.960437
Target:  5'- gCCG-CGAuCCC--GGUGAuGAUCaGGCc -3'
miRNA:   3'- -GGCaGCUuGGGuuUCACUuCUAG-CCG- -5'
26366 5' -49.3 NC_005345.2 + 5755 0.66 0.960437
Target:  5'- gCCGagGAcuGCgCCGAGGcGGuccgcAGGUCGGCg -3'
miRNA:   3'- -GGCagCU--UG-GGUUUCaCU-----UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 25409 0.66 0.960437
Target:  5'- gCCGUCGAGgCCGAGGaaauGggCGGg -3'
miRNA:   3'- -GGCAGCUUgGGUUUCacuuCuaGCCg -5'
26366 5' -49.3 NC_005345.2 + 18581 0.66 0.95635
Target:  5'- gCGUCGGGaacaCCGccGGGUcGAAagcGGUCGGCg -3'
miRNA:   3'- gGCAGCUUg---GGU--UUCA-CUU---CUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 10187 0.66 0.95635
Target:  5'- aCG-CGAAagaggaagugauCCCAugccGAAGAUCGGCa -3'
miRNA:   3'- gGCaGCUU------------GGGUuucaCUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 43507 0.66 0.95635
Target:  5'- gCCGggCGGugCCGAuc---GGGUCGGCg -3'
miRNA:   3'- -GGCa-GCUugGGUUucacuUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 29162 0.66 0.95635
Target:  5'- cCUGUC--GCCCucGGcGAaccGGGUCGGCa -3'
miRNA:   3'- -GGCAGcuUGGGuuUCaCU---UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 31879 0.66 0.95635
Target:  5'- aCGgguUCGggUgCGguGAGUucGggGAUCGGCg -3'
miRNA:   3'- gGC---AGCuuGgGU--UUCA--CuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 41413 0.66 0.95635
Target:  5'- gCCGUCGAGCCgGuccUGcAGcagCGGCa -3'
miRNA:   3'- -GGCAGCUUGGgUuucACuUCua-GCCG- -5'
26366 5' -49.3 NC_005345.2 + 34502 0.66 0.953764
Target:  5'- aUCGUCGccgugaucGACCgCGAGGUgcucccgguccucgcGAAGGUCGGg -3'
miRNA:   3'- -GGCAGC--------UUGG-GUUUCA---------------CUUCUAGCCg -5'
26366 5' -49.3 NC_005345.2 + 32333 0.66 0.951984
Target:  5'- gCCGUgUGAuCCCGAAGggcGAGGucgaGUCGGUu -3'
miRNA:   3'- -GGCA-GCUuGGGUUUCa--CUUC----UAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 38961 0.66 0.951984
Target:  5'- aCG-CGAGCgC--GGUcGAGAUCGGCg -3'
miRNA:   3'- gGCaGCUUGgGuuUCAcUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 3600 0.66 0.951984
Target:  5'- gUCGUCG-GCCCAcAGGUGAccccaCGGCc -3'
miRNA:   3'- -GGCAGCuUGGGU-UUCACUucua-GCCG- -5'
26366 5' -49.3 NC_005345.2 + 31426 0.66 0.951984
Target:  5'- cCCGgcgaUGAGCCCGAGGaUGAgcgcGGGUgcgaGGCg -3'
miRNA:   3'- -GGCa---GCUUGGGUUUC-ACU----UCUAg---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.