miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26374 3' -65.8 NC_005345.2 + 23570 0.65 0.273918
Target:  5'- cGGccgCGUCCgagcugcggcugcgGGUCGcGGCGUUCGGCGCGa -3'
miRNA:   3'- -CCa--GCGGG--------------CCGGC-CCGCGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 39562 0.66 0.269435
Target:  5'- cGGcCGguCCCGGCCGGucguGCGUUCGcagguGCGCGg -3'
miRNA:   3'- -CCaGC--GGGCCGGCC----CGCGGGC-----UGUGC- -5'
26374 3' -65.8 NC_005345.2 + 3313 0.66 0.269435
Target:  5'- cGUCGCCCGcGCCGccgccGUGCaCGuCACGg -3'
miRNA:   3'- cCAGCGGGC-CGGCc----CGCGgGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 14131 0.66 0.263133
Target:  5'- cGGUccCGCCCccacguGGCCGccgcaGCGcCCCGGCGCc -3'
miRNA:   3'- -CCA--GCGGG------CCGGCc----CGC-GGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 30493 0.66 0.263133
Target:  5'- uGGUgCGCCgGGucauggcgaacCCGGGCGgguaCCGGCAgCGg -3'
miRNA:   3'- -CCA-GCGGgCC-----------GGCCCGCg---GGCUGU-GC- -5'
26374 3' -65.8 NC_005345.2 + 19393 0.66 0.263133
Target:  5'- cGGcgUGCCCacccGCgGGGUGCuCCGugACGc -3'
miRNA:   3'- -CCa-GCGGGc---CGgCCCGCG-GGCugUGC- -5'
26374 3' -65.8 NC_005345.2 + 5658 0.66 0.263133
Target:  5'- --cCGCCCGG-CGGGC-CCgGAC-CGa -3'
miRNA:   3'- ccaGCGGGCCgGCCCGcGGgCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 42028 0.66 0.263133
Target:  5'- --cCGCCCGGUucgCGcGGCGCCacaCGuCGCGg -3'
miRNA:   3'- ccaGCGGGCCG---GC-CCGCGG---GCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 9134 0.66 0.263133
Target:  5'- cGUCgGUCCGGaacaGGGUGaCCCGAgaCACGg -3'
miRNA:   3'- cCAG-CGGGCCgg--CCCGC-GGGCU--GUGC- -5'
26374 3' -65.8 NC_005345.2 + 34737 0.66 0.263133
Target:  5'- -aUCGCCCGGCa-GGCGUCggCGACGu- -3'
miRNA:   3'- ccAGCGGGCCGgcCCGCGG--GCUGUgc -5'
26374 3' -65.8 NC_005345.2 + 39420 0.66 0.263133
Target:  5'- cGUCGgCgCGGUCGcGGCccGCgCGGCGCGg -3'
miRNA:   3'- cCAGCgG-GCCGGC-CCG--CGgGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 8795 0.66 0.263133
Target:  5'- -aUCGCCCccacGGCCGuacccGuCGCCCGcCACGg -3'
miRNA:   3'- ccAGCGGG----CCGGCc----C-GCGGGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 38583 0.66 0.263133
Target:  5'- cGUC-CUCGGUCGGcaucguggcgaGCGCCUcgGACACGg -3'
miRNA:   3'- cCAGcGGGCCGGCC-----------CGCGGG--CUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 35234 0.66 0.263133
Target:  5'- cGG-CGCUCaaGCC-GGCGUUCGACGCGa -3'
miRNA:   3'- -CCaGCGGGc-CGGcCCGCGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 13817 0.66 0.26251
Target:  5'- --aCGCgCCGGCCGcGCcgaucgcccggaaGCUCGGCGCGa -3'
miRNA:   3'- ccaGCG-GGCCGGCcCG-------------CGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 12102 0.66 0.256952
Target:  5'- cGUCGCcgCCGGCCGGaucccggcuCGCCCGGugcCGCu -3'
miRNA:   3'- cCAGCG--GGCCGGCCc--------GCGGGCU---GUGc -5'
26374 3' -65.8 NC_005345.2 + 31454 0.66 0.256952
Target:  5'- cGUCGCCgaGGCCGGcGCgGUUCG-UACGg -3'
miRNA:   3'- cCAGCGGg-CCGGCC-CG-CGGGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 37859 0.66 0.256952
Target:  5'- cGGUCGCggCCGGCgaggcucaggccCGGacggucgcggcgGUGCCCGuCACGg -3'
miRNA:   3'- -CCAGCG--GGCCG------------GCC------------CGCGGGCuGUGC- -5'
26374 3' -65.8 NC_005345.2 + 42949 0.66 0.256952
Target:  5'- -cUCGCggaCgGGCCGGGCGgCaCGcGCACGa -3'
miRNA:   3'- ccAGCG---GgCCGGCCCGCgG-GC-UGUGC- -5'
26374 3' -65.8 NC_005345.2 + 17822 0.66 0.25634
Target:  5'- uGGUcaCGUCCGGCCGcccuccagaccgcGcagcaGCGCCCGGCGgGa -3'
miRNA:   3'- -CCA--GCGGGCCGGC-------------C-----CGCGGGCUGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.