miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 5' -53.9 NC_005345.2 + 19097 0.66 0.817542
Target:  5'- uCGcCGUCgguGUCGUCGGCccacgcGUGGGCgcCGa -3'
miRNA:   3'- -GC-GCAG---UAGCAGCCG------UACCUGauGCc -5'
26375 5' -53.9 NC_005345.2 + 18155 0.66 0.817542
Target:  5'- gGCGUCGgguacagccUCGgcUCGGUGUGGGCgUACa- -3'
miRNA:   3'- gCGCAGU---------AGC--AGCCGUACCUG-AUGcc -5'
26375 5' -53.9 NC_005345.2 + 38029 0.66 0.817542
Target:  5'- cCGCGUggaCGUCGacucugUGGCAUcGGAUcGCGGu -3'
miRNA:   3'- -GCGCA---GUAGCa-----GCCGUA-CCUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 18522 0.66 0.808155
Target:  5'- aCGCGg---CGUCGGCGUccgGGGCggucugauCGGg -3'
miRNA:   3'- -GCGCaguaGCAGCCGUA---CCUGau------GCC- -5'
26375 5' -53.9 NC_005345.2 + 12598 0.66 0.798583
Target:  5'- cCGCGaUCGUCGgcuacgcgcUCGGCcgGGcACggcuCGGg -3'
miRNA:   3'- -GCGC-AGUAGC---------AGCCGuaCC-UGau--GCC- -5'
26375 5' -53.9 NC_005345.2 + 11840 0.66 0.788837
Target:  5'- gGCGagGUCGacgccaCGGCGUGGGCauCGGc -3'
miRNA:   3'- gCGCagUAGCa-----GCCGUACCUGauGCC- -5'
26375 5' -53.9 NC_005345.2 + 33015 0.66 0.788837
Target:  5'- gGCGUCGacgaUCGggcUCGGCcgcGGGgUGCGGu -3'
miRNA:   3'- gCGCAGU----AGC---AGCCGua-CCUgAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 3400 0.66 0.775925
Target:  5'- gCGCGgCAUCccccucgacgacguGUCGGUGUGGACgcUGCGc -3'
miRNA:   3'- -GCGCaGUAG--------------CAGCCGUACCUG--AUGCc -5'
26375 5' -53.9 NC_005345.2 + 28038 0.66 0.768866
Target:  5'- uCGaCGUCGUCGagcuuUCGGCG-GGugUACu- -3'
miRNA:   3'- -GC-GCAGUAGC-----AGCCGUaCCugAUGcc -5'
26375 5' -53.9 NC_005345.2 + 45118 0.66 0.767852
Target:  5'- gGCGcCGUCGUCgcacaggGGCG-GGACaacGCGGa -3'
miRNA:   3'- gCGCaGUAGCAG-------CCGUaCCUGa--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 27105 0.67 0.758664
Target:  5'- cCGCgGUCGgcUCGugagcUCGGCcgGGACcguccgGCGGg -3'
miRNA:   3'- -GCG-CAGU--AGC-----AGCCGuaCCUGa-----UGCC- -5'
26375 5' -53.9 NC_005345.2 + 17479 0.67 0.748332
Target:  5'- gCGCcuGUCucggCGUCGGgAaGGAaCUGCGGg -3'
miRNA:   3'- -GCG--CAGua--GCAGCCgUaCCU-GAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 34371 0.67 0.748332
Target:  5'- uCGCGauggaccCGUCGUCGGCGgucuccgcgcUGGGCaagguggGCGGc -3'
miRNA:   3'- -GCGCa------GUAGCAGCCGU----------ACCUGa------UGCC- -5'
26375 5' -53.9 NC_005345.2 + 36922 0.67 0.738932
Target:  5'- gCGgGUCAUCGccacggcucgggaggCGGCGgccGGACaGCGGc -3'
miRNA:   3'- -GCgCAGUAGCa--------------GCCGUa--CCUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 28853 0.67 0.737882
Target:  5'- cCGCaGUCGUCcgggggcucuUCGGCG-GGcACUACGGg -3'
miRNA:   3'- -GCG-CAGUAGc---------AGCCGUaCC-UGAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 31214 0.67 0.737882
Target:  5'- uGCG-CAccCGggugCGGCcgGGugUACGGc -3'
miRNA:   3'- gCGCaGUa-GCa---GCCGuaCCugAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 22276 0.67 0.737882
Target:  5'- aGCGgaUCGUCGaggCGGCcgGGGCgACGu -3'
miRNA:   3'- gCGC--AGUAGCa--GCCGuaCCUGaUGCc -5'
26375 5' -53.9 NC_005345.2 + 4212 0.67 0.727325
Target:  5'- cCGCGcC--UGUUGGCGUGGAagggggGCGGg -3'
miRNA:   3'- -GCGCaGuaGCAGCCGUACCUga----UGCC- -5'
26375 5' -53.9 NC_005345.2 + 9309 0.67 0.716673
Target:  5'- gGCGUUgaguUCGUCGGCGacccGGGCgGCGa -3'
miRNA:   3'- gCGCAGu---AGCAGCCGUa---CCUGaUGCc -5'
26375 5' -53.9 NC_005345.2 + 37270 0.68 0.662386
Target:  5'- uCGCGUCGUCGUCGag--GGGC-ACGu -3'
miRNA:   3'- -GCGCAGUAGCAGCcguaCCUGaUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.