miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26379 3' -54.9 NC_005345.2 + 42429 0.66 0.758281
Target:  5'- cGGCauaccgaucgucaUCGGCGUCCccacgcgcggcgauaUCGACGCcgaGGcCGUCg -3'
miRNA:   3'- -CCG-------------AGCUGCAGG---------------AGCUGUG---CCaGUAG- -5'
26379 3' -54.9 NC_005345.2 + 35398 0.66 0.755201
Target:  5'- aGCUCGAUcaGUgCCUCGAUGucGUCGUCg -3'
miRNA:   3'- cCGAGCUG--CA-GGAGCUGUgcCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 4022 0.66 0.755201
Target:  5'- ---aCGACGUCCUCGACcUGcUCAUg -3'
miRNA:   3'- ccgaGCUGCAGGAGCUGuGCcAGUAg -5'
26379 3' -54.9 NC_005345.2 + 24983 0.66 0.755201
Target:  5'- uGGCaagugcccgucgUCGAgGUgCUCGcCGCGGUCGc- -3'
miRNA:   3'- -CCG------------AGCUgCAgGAGCuGUGCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 7749 0.66 0.755201
Target:  5'- cGGCUCGACGgcacgCCgcugcacgugaUCGACACgcgGGUgcUCg -3'
miRNA:   3'- -CCGAGCUGCa----GG-----------AGCUGUG---CCAguAG- -5'
26379 3' -54.9 NC_005345.2 + 15276 0.66 0.744858
Target:  5'- cGGCgucccccacgUCGACGccgaacgCCUCGGCGaGGUuCGUCg -3'
miRNA:   3'- -CCG----------AGCUGCa------GGAGCUGUgCCA-GUAG- -5'
26379 3' -54.9 NC_005345.2 + 36726 0.66 0.744858
Target:  5'- cGCgCGACGcgCCUCGAC---GUCAUCg -3'
miRNA:   3'- cCGaGCUGCa-GGAGCUGugcCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 1194 0.66 0.744858
Target:  5'- cGGCUCGGCaGUCCggcccgCGggccacgccGCGCGGUacggGUCc -3'
miRNA:   3'- -CCGAGCUG-CAGGa-----GC---------UGUGCCAg---UAG- -5'
26379 3' -54.9 NC_005345.2 + 966 0.66 0.744858
Target:  5'- cGC-CGGCcGUCCUUGACGgCGGcccggagCAUCa -3'
miRNA:   3'- cCGaGCUG-CAGGAGCUGU-GCCa------GUAG- -5'
26379 3' -54.9 NC_005345.2 + 14195 0.66 0.744858
Target:  5'- cGGCUUGAgCGUCgUCGucCACaGGaCAUCc -3'
miRNA:   3'- -CCGAGCU-GCAGgAGCu-GUG-CCaGUAG- -5'
26379 3' -54.9 NC_005345.2 + 30684 0.66 0.744858
Target:  5'- uGGgUCGACGaUCCggcCGGCugcggguggccGCGGUgAUCg -3'
miRNA:   3'- -CCgAGCUGC-AGGa--GCUG-----------UGCCAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 47619 0.66 0.7344
Target:  5'- uGGCUCGACGcgCC-CGACACccaagaUCGUUu -3'
miRNA:   3'- -CCGAGCUGCa-GGaGCUGUGcc----AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 39554 0.66 0.7344
Target:  5'- cGGCcccgCGGCcgGUCC-CGGC-CGGUCGUg -3'
miRNA:   3'- -CCGa---GCUG--CAGGaGCUGuGCCAGUAg -5'
26379 3' -54.9 NC_005345.2 + 30391 0.66 0.7344
Target:  5'- aGGUcgaGGCGUaCCUCGACgACGcGUCcgCg -3'
miRNA:   3'- -CCGag-CUGCA-GGAGCUG-UGC-CAGuaG- -5'
26379 3' -54.9 NC_005345.2 + 1427 0.66 0.723841
Target:  5'- -cCUCGuCGUCCcaguccgaCGGCACGGggUCGUCg -3'
miRNA:   3'- ccGAGCuGCAGGa-------GCUGUGCC--AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 27117 0.66 0.713191
Target:  5'- uGCUCGGCG-CCacggCGGCAcCGGccggCGUCg -3'
miRNA:   3'- cCGAGCUGCaGGa---GCUGU-GCCa---GUAG- -5'
26379 3' -54.9 NC_005345.2 + 2773 0.66 0.713191
Target:  5'- cGCgCGGCGgCCUCGGUACGGcUUGUCg -3'
miRNA:   3'- cCGaGCUGCaGGAGCUGUGCC-AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 27891 0.67 0.702461
Target:  5'- gGGUUCGACGUacagCUCGGCgACGcGUUcgguGUCg -3'
miRNA:   3'- -CCGAGCUGCAg---GAGCUG-UGC-CAG----UAG- -5'
26379 3' -54.9 NC_005345.2 + 5666 0.67 0.702461
Target:  5'- cGGCgaUCGAgGUCaccugugcgUCGgugaGCGCGGUCGUCu -3'
miRNA:   3'- -CCG--AGCUgCAGg--------AGC----UGUGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 43991 0.67 0.702461
Target:  5'- gGGCggCGACGagUCgCUCGuGCACGGU-GUCg -3'
miRNA:   3'- -CCGa-GCUGC--AG-GAGC-UGUGCCAgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.