miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 33718 0.65 0.719965
Target:  5'- cGUGCCGACCccGCUUCgggauuccccgaGCCGgUGCc- -3'
miRNA:   3'- -CACGGCUGGcuCGAAG------------UGGUgAUGcu -5'
26394 3' -55 NC_005345.2 + 17253 0.65 0.719965
Target:  5'- -cGuCCGACCGGGCggcaggCGCCGCg---- -3'
miRNA:   3'- caC-GGCUGGCUCGaa----GUGGUGaugcu -5'
26394 3' -55 NC_005345.2 + 34779 0.65 0.719965
Target:  5'- -gGCCGgucGCCGAGCUgCGCCGggucGCGGu -3'
miRNA:   3'- caCGGC---UGGCUCGAaGUGGUga--UGCU- -5'
26394 3' -55 NC_005345.2 + 6085 0.65 0.719965
Target:  5'- cUGCCcgacgacacGACCGAGCcggCACCGCgagugcaccgUACGGc -3'
miRNA:   3'- cACGG---------CUGGCUCGaa-GUGGUG----------AUGCU- -5'
26394 3' -55 NC_005345.2 + 5641 0.66 0.709131
Target:  5'- -cGCCGAcCCGAuCggCACCGCccgGCGGg -3'
miRNA:   3'- caCGGCU-GGCUcGaaGUGGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 25081 0.66 0.709131
Target:  5'- -gGCCGGCCGAucgGC-UCGCCG-UACGc -3'
miRNA:   3'- caCGGCUGGCU---CGaAGUGGUgAUGCu -5'
26394 3' -55 NC_005345.2 + 38275 0.66 0.709131
Target:  5'- gGUGCgGGCaCGGGacgCGCCGCgUGCGGc -3'
miRNA:   3'- -CACGgCUG-GCUCgaaGUGGUG-AUGCU- -5'
26394 3' -55 NC_005345.2 + 19392 0.66 0.709131
Target:  5'- cGUGCCGagcagcgucgcGCCGAGCUcgguCgGCUGCGc -3'
miRNA:   3'- -CACGGC-----------UGGCUCGAagu-GgUGAUGCu -5'
26394 3' -55 NC_005345.2 + 13261 0.66 0.709131
Target:  5'- aUGCCG-CCGucGGCga-ACCGCUGCa- -3'
miRNA:   3'- cACGGCuGGC--UCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 5602 0.66 0.709131
Target:  5'- cGUGCCGuggggcGCCGGGCUcgUgGCCGacGCGGu -3'
miRNA:   3'- -CACGGC------UGGCUCGA--AgUGGUgaUGCU- -5'
26394 3' -55 NC_005345.2 + 25863 0.66 0.69822
Target:  5'- -gGCCGGCCG----UCGCCGCUgaucACGAu -3'
miRNA:   3'- caCGGCUGGCucgaAGUGGUGA----UGCU- -5'
26394 3' -55 NC_005345.2 + 13188 0.66 0.69822
Target:  5'- aUGaCCGGcCCGAGCggCAgcCCGCgcgGCGAg -3'
miRNA:   3'- cAC-GGCU-GGCUCGaaGU--GGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 21434 0.66 0.69822
Target:  5'- -gGCCGGCCGcgucuGCggaCACCA-UGCGAa -3'
miRNA:   3'- caCGGCUGGCu----CGaa-GUGGUgAUGCU- -5'
26394 3' -55 NC_005345.2 + 45509 0.66 0.69822
Target:  5'- cUGCCG-CCGGGCUgcggacggCACaC-CUGCGGc -3'
miRNA:   3'- cACGGCuGGCUCGAa-------GUG-GuGAUGCU- -5'
26394 3' -55 NC_005345.2 + 34239 0.66 0.69822
Target:  5'- -cGCCGcGCCGcggcccGCUUCGcCCGCUGCu- -3'
miRNA:   3'- caCGGC-UGGCu-----CGAAGU-GGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 43713 0.66 0.69822
Target:  5'- -gGCCGAcCCGGGCgcCGCCgaagaACUcgGCGAg -3'
miRNA:   3'- caCGGCU-GGCUCGaaGUGG-----UGA--UGCU- -5'
26394 3' -55 NC_005345.2 + 11711 0.66 0.687243
Target:  5'- -gGCCGACC-AGCgggcCGCCGCcGCGu -3'
miRNA:   3'- caCGGCUGGcUCGaa--GUGGUGaUGCu -5'
26394 3' -55 NC_005345.2 + 23356 0.66 0.687243
Target:  5'- -gGCCGACUGuGCcaucgccaugCGCCAC-ACGAg -3'
miRNA:   3'- caCGGCUGGCuCGaa--------GUGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 11420 0.66 0.676213
Target:  5'- -cGCCGACCagccGGCgccgCGCCGCagcGCGAu -3'
miRNA:   3'- caCGGCUGGc---UCGaa--GUGGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 4414 0.66 0.676213
Target:  5'- -aGUCaGugCGAGCUgUGCCACgggGCGAg -3'
miRNA:   3'- caCGG-CugGCUCGAaGUGGUGa--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.