miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26398 5' -58.7 NC_005345.2 + 43854 0.66 0.567711
Target:  5'- cGGUCGAcgggGcGUCGGCCggGACUCCGcggCGg -3'
miRNA:   3'- -CCGGCU----C-CAGCUGGa-CUGGGGCaa-GC- -5'
26398 5' -58.7 NC_005345.2 + 37960 0.66 0.567711
Target:  5'- aGGCCGGcGUCGACCaGGCUgCGg--- -3'
miRNA:   3'- -CCGGCUcCAGCUGGaCUGGgGCaagc -5'
26398 5' -58.7 NC_005345.2 + 30018 0.66 0.567711
Target:  5'- cGGCCGAGGUCG-CCgagcggaucGGCgCCCacgCGu -3'
miRNA:   3'- -CCGGCUCCAGCuGGa--------CUG-GGGcaaGC- -5'
26398 5' -58.7 NC_005345.2 + 20422 0.66 0.567711
Target:  5'- cGCCGuGGgcgcCGuACCUGcCCCCGUg-- -3'
miRNA:   3'- cCGGCuCCa---GC-UGGACuGGGGCAagc -5'
26398 5' -58.7 NC_005345.2 + 7305 0.66 0.561418
Target:  5'- cGCCGAGGUCGuCCccgaugagucggcgGACgCCGagUCGc -3'
miRNA:   3'- cCGGCUCCAGCuGGa-------------CUGgGGCa-AGC- -5'
26398 5' -58.7 NC_005345.2 + 37755 0.66 0.557234
Target:  5'- cGUCGAGGUCGAgCUGcuCgCCCGcaggCGg -3'
miRNA:   3'- cCGGCUCCAGCUgGACu-G-GGGCaa--GC- -5'
26398 5' -58.7 NC_005345.2 + 17059 0.66 0.546812
Target:  5'- -cCCGAGGUCGaACCcGAgCCCGa--- -3'
miRNA:   3'- ccGGCUCCAGC-UGGaCUgGGGCaagc -5'
26398 5' -58.7 NC_005345.2 + 46077 0.66 0.536453
Target:  5'- cGGCCGGGGcCG-CCgGGgCCUGcgCGg -3'
miRNA:   3'- -CCGGCUCCaGCuGGaCUgGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 47043 0.66 0.536453
Target:  5'- cGCCGucucGaCGACgCUGACCCCGgcCGg -3'
miRNA:   3'- cCGGCuc--CaGCUG-GACUGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 39419 0.66 0.536453
Target:  5'- -aUCGAGGcCGACCcgcucGACCCCGgcgaCGg -3'
miRNA:   3'- ccGGCUCCaGCUGGa----CUGGGGCaa--GC- -5'
26398 5' -58.7 NC_005345.2 + 37989 0.66 0.523091
Target:  5'- cGCCGGGGUgccgccguacaucuUGACCaccGGCCCCGgcacaagcccgUCGg -3'
miRNA:   3'- cCGGCUCCA--------------GCUGGa--CUGGGGCa----------AGC- -5'
26398 5' -58.7 NC_005345.2 + 5212 0.66 0.515949
Target:  5'- cGGCCGGgcagcucgcGGcCGGCCUGAUCgCCGacgCGc -3'
miRNA:   3'- -CCGGCU---------CCaGCUGGACUGG-GGCaa-GC- -5'
26398 5' -58.7 NC_005345.2 + 20560 0.66 0.515949
Target:  5'- cGUCGAGGUgucaagcgUGACC-GACUCCGUcgcgUCGg -3'
miRNA:   3'- cCGGCUCCA--------GCUGGaCUGGGGCA----AGC- -5'
26398 5' -58.7 NC_005345.2 + 35834 0.67 0.505816
Target:  5'- cGGgCGAGGgcgCGGCgggUGGCUCgGUUCGg -3'
miRNA:   3'- -CCgGCUCCa--GCUGg--ACUGGGgCAAGC- -5'
26398 5' -58.7 NC_005345.2 + 15644 0.67 0.505816
Target:  5'- cGGUCGGGGccgcaaugCGACCgGGCCCgGUg-- -3'
miRNA:   3'- -CCGGCUCCa-------GCUGGaCUGGGgCAagc -5'
26398 5' -58.7 NC_005345.2 + 18001 0.67 0.505816
Target:  5'- uGUCGAGGccUCGACCgccugucgGACgCCGggCGa -3'
miRNA:   3'- cCGGCUCC--AGCUGGa-------CUGgGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 8950 0.67 0.505816
Target:  5'- gGGCUGcgggugcucGGGcUCGACCUGucGCUCCG-UCGa -3'
miRNA:   3'- -CCGGC---------UCC-AGCUGGAC--UGGGGCaAGC- -5'
26398 5' -58.7 NC_005345.2 + 48183 0.67 0.495769
Target:  5'- gGGCCGccgucaAGGaCGGCCggcGuAUCCCGUUCa -3'
miRNA:   3'- -CCGGC------UCCaGCUGGa--C-UGGGGCAAGc -5'
26398 5' -58.7 NC_005345.2 + 24645 0.67 0.495769
Target:  5'- cGCgGuGGUCGACCagGAUCCCG--CGg -3'
miRNA:   3'- cCGgCuCCAGCUGGa-CUGGGGCaaGC- -5'
26398 5' -58.7 NC_005345.2 + 45560 0.67 0.491775
Target:  5'- cGGCCGAGGUCGgggcggGCCgguugcggccgggGGCCgCGaaCGg -3'
miRNA:   3'- -CCGGCUCCAGC------UGGa------------CUGGgGCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.