miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26400 3' -55.9 NC_005345.2 + 14544 0.66 0.669267
Target:  5'- -cGcACCcagUUGACGCCgGCGCugAaCGCg -3'
miRNA:   3'- uaCuUGG---AGCUGCGG-CGCGugUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 42084 0.66 0.669267
Target:  5'- -cGGGCCUCGGCcgcguaguccgGCCGgGcCGCcucgAUCGCc -3'
miRNA:   3'- uaCUUGGAGCUG-----------CGGCgC-GUG----UAGCG- -5'
26400 3' -55.9 NC_005345.2 + 11721 0.66 0.669267
Target:  5'- -cGGGCCgc--CGCCGCGUACcaacUCGCc -3'
miRNA:   3'- uaCUUGGagcuGCGGCGCGUGu---AGCG- -5'
26400 3' -55.9 NC_005345.2 + 39338 0.66 0.665961
Target:  5'- uAUGAGgcaccCCUCGGCgugGCCGUGCGCuacgagaucgagaugCGCg -3'
miRNA:   3'- -UACUU-----GGAGCUG---CGGCGCGUGua-------------GCG- -5'
26400 3' -55.9 NC_005345.2 + 14797 0.66 0.658236
Target:  5'- gGUGcGCUUCGACGUCGaGCgGCGggCGCg -3'
miRNA:   3'- -UACuUGGAGCUGCGGCgCG-UGUa-GCG- -5'
26400 3' -55.9 NC_005345.2 + 18253 0.66 0.658236
Target:  5'- gGUGcugCUCGcCgGCCGCGC-CGUCGCc -3'
miRNA:   3'- -UACuugGAGCuG-CGGCGCGuGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 21126 0.66 0.658236
Target:  5'- --cGACgUCGAgGCCuGCGCGCucCGCa -3'
miRNA:   3'- uacUUGgAGCUgCGG-CGCGUGuaGCG- -5'
26400 3' -55.9 NC_005345.2 + 7744 0.66 0.658236
Target:  5'- -aGGACCggcUCGAcggcaCGCCGCuGCACGUgaucgacaCGCg -3'
miRNA:   3'- uaCUUGG---AGCU-----GCGGCG-CGUGUA--------GCG- -5'
26400 3' -55.9 NC_005345.2 + 19261 0.66 0.658236
Target:  5'- -aGGACCgggaugccgaCGGCgGCCGCGUGCGUC-Ca -3'
miRNA:   3'- uaCUUGGa---------GCUG-CGGCGCGUGUAGcG- -5'
26400 3' -55.9 NC_005345.2 + 44423 0.66 0.658236
Target:  5'- gGUGAACC-CGA-G-CGCGCugAUCGg -3'
miRNA:   3'- -UACUUGGaGCUgCgGCGCGugUAGCg -5'
26400 3' -55.9 NC_005345.2 + 41872 0.66 0.64718
Target:  5'- ---cGCCUCGGCGaUCGCGCgggcgGCGaCGCu -3'
miRNA:   3'- uacuUGGAGCUGC-GGCGCG-----UGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 36167 0.66 0.64718
Target:  5'- -cGggUC-CGGCGUgcaGCGUugGUCGCc -3'
miRNA:   3'- uaCuuGGaGCUGCGg--CGCGugUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 19376 0.66 0.64718
Target:  5'- -cGAGggaCUCGGCgGUCGUGCcgagcaGCGUCGCg -3'
miRNA:   3'- uaCUUg--GAGCUG-CGGCGCG------UGUAGCG- -5'
26400 3' -55.9 NC_005345.2 + 10510 0.66 0.64718
Target:  5'- gGUGGACg-UGACGaCCGCGCuguCGaCGCg -3'
miRNA:   3'- -UACUUGgaGCUGC-GGCGCGu--GUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 30636 0.66 0.64718
Target:  5'- cAUGGcGCCgagGACGCCGaGCGCAgCGCc -3'
miRNA:   3'- -UACU-UGGag-CUGCGGCgCGUGUaGCG- -5'
26400 3' -55.9 NC_005345.2 + 29021 0.66 0.64718
Target:  5'- -cGAACgUCGACGUCGaCG-ACAUCa- -3'
miRNA:   3'- uaCUUGgAGCUGCGGC-GCgUGUAGcg -5'
26400 3' -55.9 NC_005345.2 + 26877 0.66 0.646073
Target:  5'- -cGGccGCCUCGACGauCCGCugcgcccacggcaGCACcUCGCc -3'
miRNA:   3'- uaCU--UGGAGCUGC--GGCG-------------CGUGuAGCG- -5'
26400 3' -55.9 NC_005345.2 + 39476 0.66 0.63611
Target:  5'- cUGcAGCCggCGGCGCuCGCGgUACGUCaGCc -3'
miRNA:   3'- uAC-UUGGa-GCUGCG-GCGC-GUGUAG-CG- -5'
26400 3' -55.9 NC_005345.2 + 17699 0.66 0.63611
Target:  5'- -cGcACCcCGGCGCCuCGCACccgCGCu -3'
miRNA:   3'- uaCuUGGaGCUGCGGcGCGUGua-GCG- -5'
26400 3' -55.9 NC_005345.2 + 32662 0.66 0.63611
Target:  5'- --cAACCUCGACGCCGUcgagGCcgAgGUCGa -3'
miRNA:   3'- uacUUGGAGCUGCGGCG----CG--UgUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.