miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 30233 0.66 0.644023
Target:  5'- -cCGGCgGUGAGC-CGGUCGAcGA-CGGu -3'
miRNA:   3'- auGCUG-CGCUCGcGCCAGCU-CUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 38881 0.66 0.644023
Target:  5'- -cCGGcCGCGAGUGgaCGG-CaGAGAUCGGc -3'
miRNA:   3'- auGCU-GCGCUCGC--GCCaG-CUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 35674 0.66 0.633204
Target:  5'- -cCGACGCG-GUGCcGUCGGGccacagcacgccGUCGGc -3'
miRNA:   3'- auGCUGCGCuCGCGcCAGCUC------------UAGCC- -5'
26413 5' -57.1 NC_005345.2 + 31709 0.66 0.633204
Target:  5'- gACGGuccuCGgGuGCGCGGaCGGGGuUCGGg -3'
miRNA:   3'- aUGCU----GCgCuCGCGCCaGCUCU-AGCC- -5'
26413 5' -57.1 NC_005345.2 + 8416 0.66 0.633204
Target:  5'- -uCGACG-GGGCGCGGcuggacgcCGAGcgGUCGGu -3'
miRNA:   3'- auGCUGCgCUCGCGCCa-------GCUC--UAGCC- -5'
26413 5' -57.1 NC_005345.2 + 28016 0.66 0.629958
Target:  5'- gAgGAUGCgGAGCGCGcaggccucgacgucGUCGAGcuuUCGGc -3'
miRNA:   3'- aUgCUGCG-CUCGCGC--------------CAGCUCu--AGCC- -5'
26413 5' -57.1 NC_005345.2 + 29251 0.66 0.626712
Target:  5'- cGCGAUGCGcagcggcucgcccgcAacaucggcGCGCGGuUCGAGGUCGc -3'
miRNA:   3'- aUGCUGCGC---------------U--------CGCGCC-AGCUCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 32800 0.66 0.622385
Target:  5'- gGCGAUGCucGGCGCGuuccgCGAGGcacUCGGg -3'
miRNA:   3'- aUGCUGCGc-UCGCGCca---GCUCU---AGCC- -5'
26413 5' -57.1 NC_005345.2 + 12488 0.66 0.622385
Target:  5'- gUGCGcACGCGGGCG-GaUCGAGGuUUGGu -3'
miRNA:   3'- -AUGC-UGCGCUCGCgCcAGCUCU-AGCC- -5'
26413 5' -57.1 NC_005345.2 + 9171 0.66 0.622385
Target:  5'- gUAgGACucgGCGAGCGUGG-CGAGGaaUCGc -3'
miRNA:   3'- -AUgCUG---CGCUCGCGCCaGCUCU--AGCc -5'
26413 5' -57.1 NC_005345.2 + 35844 0.66 0.622385
Target:  5'- cGCGGCGgGuGGCuCGGUUcgggcgGGGGUCGGg -3'
miRNA:   3'- aUGCUGCgC-UCGcGCCAG------CUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 41523 0.66 0.622385
Target:  5'- cGCGgaGCGCGAGCGUcucggcgaccuGGUCGAcGAcgUCGu -3'
miRNA:   3'- aUGC--UGCGCUCGCG-----------CCAGCU-CU--AGCc -5'
26413 5' -57.1 NC_005345.2 + 863 0.66 0.622385
Target:  5'- gACGaucaGCGCGcacugcGCGCGGUCGGG--CGGc -3'
miRNA:   3'- aUGC----UGCGCu-----CGCGCCAGCUCuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 30955 0.66 0.615897
Target:  5'- cGCGAC-CGGgugcauuggaacggcGCGCGGuUCGAGGugaUCGGc -3'
miRNA:   3'- aUGCUGcGCU---------------CGCGCC-AGCUCU---AGCC- -5'
26413 5' -57.1 NC_005345.2 + 31870 0.66 0.611574
Target:  5'- aACGugGgcacggguuCGGGUGCGGU-GAGuUCGGg -3'
miRNA:   3'- aUGCugC---------GCUCGCGCCAgCUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 38598 0.66 0.611574
Target:  5'- -uCGugGCGAGCGCcucGGacacggcgaucUCGAcGUCGGc -3'
miRNA:   3'- auGCugCGCUCGCG---CC-----------AGCUcUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 17138 0.66 0.611574
Target:  5'- cGCGGuCGCGA-CGuUGGUCGGGG-CGGu -3'
miRNA:   3'- aUGCU-GCGCUcGC-GCCAGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 23584 0.66 0.611574
Target:  5'- cUGCGGCuGCGGGuCGCGG-CGu--UCGGc -3'
miRNA:   3'- -AUGCUG-CGCUC-GCGCCaGCucuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 13645 0.66 0.611574
Target:  5'- cGCGGCGUGAGCGCcGaCGAGcagCGc -3'
miRNA:   3'- aUGCUGCGCUCGCGcCaGCUCua-GCc -5'
26413 5' -57.1 NC_005345.2 + 47937 0.66 0.611574
Target:  5'- -cCGACcCGaAGCGUGG-CGAGAUCa- -3'
miRNA:   3'- auGCUGcGC-UCGCGCCaGCUCUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.