miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 48035 0.67 0.229312
Target:  5'- -aGGCuaCGCGGcuguGCUCGuCCGGCgCGCa -3'
miRNA:   3'- agCCGuaGCGCC----CGAGCcGGCCG-GCG- -5'
26415 3' -64.9 NC_005345.2 + 47946 0.73 0.074662
Target:  5'- gCGGCGUggccCGCGGGC-CGgacuGCCGaGCCGCc -3'
miRNA:   3'- aGCCGUA----GCGCCCGaGC----CGGC-CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 47103 0.67 0.235025
Target:  5'- gCGGCc-CGcCGGGC-CGcGCCGGgcCCGCu -3'
miRNA:   3'- aGCCGuaGC-GCCCGaGC-CGGCC--GGCG- -5'
26415 3' -64.9 NC_005345.2 + 45559 0.72 0.090176
Target:  5'- gCGGCcgagGUCgggGCGGGCcgguugCGGCCgggGGCCGCg -3'
miRNA:   3'- aGCCG----UAG---CGCCCGa-----GCCGG---CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 45469 0.66 0.277082
Target:  5'- aCGGCGgccgggGUGGGCaugUCGGCgaagguggugggGGCCGCg -3'
miRNA:   3'- aGCCGUag----CGCCCG---AGCCGg-----------CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 45453 0.67 0.2265
Target:  5'- cCGGCAgagcauucucuaCGUGGGCgaccaccCGGCaaacgacacgauccCGGCCGCu -3'
miRNA:   3'- aGCCGUa-----------GCGCCCGa------GCCG--------------GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 45368 0.66 0.252881
Target:  5'- cCGuGCggCGCGGGUccgcguucaccUCGGCCGuCCaGCg -3'
miRNA:   3'- aGC-CGuaGCGCCCG-----------AGCCGGCcGG-CG- -5'
26415 3' -64.9 NC_005345.2 + 45062 0.72 0.090176
Target:  5'- -gGGCAUCGUGGGCcgacUGGCuCGG-CGCa -3'
miRNA:   3'- agCCGUAGCGCCCGa---GCCG-GCCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 44670 0.66 0.278406
Target:  5'- aCGGC-UCGuCGaGC-CGGacaCGGCCGCc -3'
miRNA:   3'- aGCCGuAGC-GCcCGaGCCg--GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 43937 0.74 0.065182
Target:  5'- aCGGCGUguagCGcCGGGC-CGGCCGuGCCGa -3'
miRNA:   3'- aGCCGUA----GC-GCCCGaGCCGGC-CGGCg -5'
26415 3' -64.9 NC_005345.2 + 43912 0.77 0.042043
Target:  5'- gCGGCGcgcagCGCGucGGCgaucaGGCCGGCCGCg -3'
miRNA:   3'- aGCCGUa----GCGC--CCGag---CCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 43853 0.69 0.169541
Target:  5'- cCGGuCGaCG-GGGCgUCGGCCGGgacuCCGCg -3'
miRNA:   3'- aGCC-GUaGCgCCCG-AGCCGGCC----GGCG- -5'
26415 3' -64.9 NC_005345.2 + 43638 0.69 0.156542
Target:  5'- gCGGgGUCGCGGuaguagcgaccccGCUCGGuuGcGaCCGCc -3'
miRNA:   3'- aGCCgUAGCGCC-------------CGAGCCggC-C-GGCG- -5'
26415 3' -64.9 NC_005345.2 + 43475 0.73 0.085455
Target:  5'- gCGGCGcagCGCGgucGGCUCGGuCCGGgcCCGCc -3'
miRNA:   3'- aGCCGUa--GCGC---CCGAGCC-GGCC--GGCG- -5'
26415 3' -64.9 NC_005345.2 + 43351 0.68 0.197462
Target:  5'- aCGGC-UCGaccuCGGGgUCGGCCGGguaCgGCa -3'
miRNA:   3'- aGCCGuAGC----GCCCgAGCCGGCC---GgCG- -5'
26415 3' -64.9 NC_005345.2 + 43116 0.67 0.228747
Target:  5'- -gGGCGUCcCGgaccgguGGCccaaCGGCCGGCCGg -3'
miRNA:   3'- agCCGUAGcGC-------CCGa---GCCGGCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 43046 0.71 0.111647
Target:  5'- aCGGUGcacUCGCGGuGC-CGGCuCGGUCGUg -3'
miRNA:   3'- aGCCGU---AGCGCC-CGaGCCG-GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 42925 0.66 0.269246
Target:  5'- -gGGCGUCGUGGuGCagguaucgggaggUGGCCagggcGCCGCg -3'
miRNA:   3'- agCCGUAGCGCC-CGa------------GCCGGc----CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 42761 0.72 0.103085
Target:  5'- cCGGCgGUUGcCGGGCUUGGaacuCGGCCGa -3'
miRNA:   3'- aGCCG-UAGC-GCCCGAGCCg---GCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 42658 0.68 0.183031
Target:  5'- gCGGCGUCcacgccuCGGGCUC-GCCG-CCGUa -3'
miRNA:   3'- aGCCGUAGc------GCCCGAGcCGGCcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.