miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 48893 0.75 0.147204
Target:  5'- -gUGGCGGCGAgGUgcgggCGGCGAUGGCUCc -3'
miRNA:   3'- uaGCUGCCGCUgCA-----GCUGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 48427 0.7 0.323073
Target:  5'- cGUCGACGGCGugGgCGAucUGGagcaaGaGCCCg -3'
miRNA:   3'- -UAGCUGCCGCugCaGCU--GCUg----C-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 48380 0.71 0.252769
Target:  5'- -gCGACGGCGcugcgcugggagaACGUCGACcugGAC-GCCCa -3'
miRNA:   3'- uaGCUGCCGC-------------UGCAGCUG---CUGcCGGG- -5'
26416 3' -59.2 NC_005345.2 + 47875 0.79 0.076476
Target:  5'- -gCGACGGUGACGUCGGcCGGCGuGCUg -3'
miRNA:   3'- uaGCUGCCGCUGCAGCU-GCUGC-CGGg -5'
26416 3' -59.2 NC_005345.2 + 47433 0.68 0.388433
Target:  5'- -gCGACGaGCGGuCgGUCGucuCGcCGGCCCa -3'
miRNA:   3'- uaGCUGC-CGCU-G-CAGCu--GCuGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 46110 0.71 0.247156
Target:  5'- -aCG-CGGCGACccugucgggGUCGaaGCGGCGGCCUc -3'
miRNA:   3'- uaGCuGCCGCUG---------CAGC--UGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 45840 0.73 0.191534
Target:  5'- -aCGGCGGCGGCGcgggCGACGAUcgugggggcgggGaGCCCg -3'
miRNA:   3'- uaGCUGCCGCUGCa---GCUGCUG------------C-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 45454 0.73 0.196561
Target:  5'- -cCGcCGGCGGCcgaGACGGCGGCCg -3'
miRNA:   3'- uaGCuGCCGCUGcagCUGCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 45421 0.69 0.346588
Target:  5'- uUCGACcGCGuCGUCGACGucgcaGGCaCCc -3'
miRNA:   3'- uAGCUGcCGCuGCAGCUGCug---CCG-GG- -5'
26416 3' -59.2 NC_005345.2 + 45178 0.68 0.41872
Target:  5'- cGUCGAgGGUGACGaacccgggggucgccUCGACGuACagacGCCCg -3'
miRNA:   3'- -UAGCUgCCGCUGC---------------AGCUGC-UGc---CGGG- -5'
26416 3' -59.2 NC_005345.2 + 44873 0.68 0.406075
Target:  5'- -gCGGCGGCcGCGUCG-CGAggcgcagcaacgUGGCCUc -3'
miRNA:   3'- uaGCUGCCGcUGCAGCuGCU------------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 44491 0.77 0.109695
Target:  5'- -gCGAaGGCGACGgccgaggcacagcaGGCGACGGCCCg -3'
miRNA:   3'- uaGCUgCCGCUGCag------------CUGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 44383 0.67 0.461891
Target:  5'- gGUCGcCGGCGAgggugcCGUCGAggucCGAguCGaGCCCg -3'
miRNA:   3'- -UAGCuGCCGCU------GCAGCU----GCU--GC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 43903 0.72 0.212336
Target:  5'- cAUCGccacGCGGCGcgcagcGCGUCGGCGAUcaGGCCg -3'
miRNA:   3'- -UAGC----UGCCGC------UGCAGCUGCUG--CCGGg -5'
26416 3' -59.2 NC_005345.2 + 43855 0.72 0.217277
Target:  5'- gGUCGACGG-GGCGUCGgccgggacuccGCGGCGGagcgcguCCCg -3'
miRNA:   3'- -UAGCUGCCgCUGCAGC-----------UGCUGCC-------GGG- -5'
26416 3' -59.2 NC_005345.2 + 43520 0.72 0.24104
Target:  5'- gAUCGGguCGGCGaucaccGCGUCGGCcACGaGCCCg -3'
miRNA:   3'- -UAGCU--GCCGC------UGCAGCUGcUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 43459 0.68 0.388433
Target:  5'- --gGACGGCGGCGaguucgCGGCGcagcGCGGUCg -3'
miRNA:   3'- uagCUGCCGCUGCa-----GCUGC----UGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 43432 0.68 0.424213
Target:  5'- -aCGGcCGGCcuGGCGUCGAagauCGACGGaCUCa -3'
miRNA:   3'- uaGCU-GCCG--CUGCAGCU----GCUGCC-GGG- -5'
26416 3' -59.2 NC_005345.2 + 43274 0.67 0.433461
Target:  5'- gGUCGuuuCGGUGGCGaCGACGuccuCGGCg- -3'
miRNA:   3'- -UAGCu--GCCGCUGCaGCUGCu---GCCGgg -5'
26416 3' -59.2 NC_005345.2 + 42457 0.67 0.471584
Target:  5'- -aCGcGCGGCGAUaUCGACGccgaGGCCg -3'
miRNA:   3'- uaGC-UGCCGCUGcAGCUGCug--CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.