miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 48928 0.66 0.558948
Target:  5'- aCCGAGgguguucgaacgcuGCGGGcgGUGUGacGCCGgaUGCCa -3'
miRNA:   3'- gGGCUU--------------UGCCCuaCGCGC--UGGC--GCGG- -5'
26417 5' -58.1 NC_005345.2 + 48840 0.69 0.423035
Target:  5'- cCCCGccccuucCGGGggGCGgGGCgGUGCUg -3'
miRNA:   3'- -GGGCuuu----GCCCuaCGCgCUGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 48699 0.7 0.337278
Target:  5'- --aGggGCGGGuAUGCGCcacgGACC-CGCCc -3'
miRNA:   3'- gggCuuUGCCC-UACGCG----CUGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 48582 0.68 0.48036
Target:  5'- cCCCGAuuGGCGaGGAcccGUaCGACCucGCGCCg -3'
miRNA:   3'- -GGGCU--UUGC-CCUa--CGcGCUGG--CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 47799 0.66 0.593794
Target:  5'- aCCGGcuCGuGGcagGCGCGuuACCGCGaCCc -3'
miRNA:   3'- gGGCUuuGC-CCua-CGCGC--UGGCGC-GG- -5'
26417 5' -58.1 NC_005345.2 + 47647 0.66 0.583187
Target:  5'- uCCCGAAcaGCGGaGGaGCggacagGUGACCcaugGCGCCu -3'
miRNA:   3'- -GGGCUU--UGCC-CUaCG------CGCUGG----CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 47135 0.67 0.520602
Target:  5'- cCCCGGAGCagcggagcgagGGGgcGCuGUGAgCGcCGCCu -3'
miRNA:   3'- -GGGCUUUG-----------CCCuaCG-CGCUgGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 46779 0.7 0.350929
Target:  5'- gCgCGcGACGGGGaggucacgcgccguUGCGCGAUCcCGCCa -3'
miRNA:   3'- -GgGCuUUGCCCU--------------ACGCGCUGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 46079 0.66 0.572618
Target:  5'- gCCGggGCcgccGGGGccUGCGCGGacauccaCGCGgCg -3'
miRNA:   3'- gGGCuuUG----CCCU--ACGCGCUg------GCGCgG- -5'
26417 5' -58.1 NC_005345.2 + 45755 0.67 0.541216
Target:  5'- gUCGAGG-GGGAUGcCGCGccggACCuCGCCg -3'
miRNA:   3'- gGGCUUUgCCCUAC-GCGC----UGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 45708 0.69 0.413884
Target:  5'- uCCCGGcgGGCGGGGgucUGCGUGcGCaGCGUCc -3'
miRNA:   3'- -GGGCU--UUGCCCU---ACGCGC-UGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 45568 0.69 0.423035
Target:  5'- gUCGggGCGGGccgGuUGCGGCCGgggGCCg -3'
miRNA:   3'- gGGCuuUGCCCua-C-GCGCUGGCg--CGG- -5'
26417 5' -58.1 NC_005345.2 + 45475 0.68 0.477402
Target:  5'- gCCGGggUGGGcAUGUcggcgaagguggugGgGGCCGCGUCc -3'
miRNA:   3'- gGGCUuuGCCC-UACG--------------CgCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 45386 0.7 0.344456
Target:  5'- -gCGAGugGGGGUgugccaagcccacGCGCGAguucuucgaCCGCGUCg -3'
miRNA:   3'- ggGCUUugCCCUA-------------CGCGCU---------GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 45325 0.66 0.593794
Target:  5'- aUCCGAGcCGGcGAgcugcUGCGCGGCCucgaucUGCCc -3'
miRNA:   3'- -GGGCUUuGCC-CU-----ACGCGCUGGc-----GCGG- -5'
26417 5' -58.1 NC_005345.2 + 45220 0.7 0.370013
Target:  5'- gCCCGGucACGGGG-GUGCGGUCGUcaGCCa -3'
miRNA:   3'- -GGGCUu-UGCCCUaCGCGCUGGCG--CGG- -5'
26417 5' -58.1 NC_005345.2 + 45202 0.67 0.520602
Target:  5'- gCCCGAGA--GGcUGC-CGGCCGCGgCg -3'
miRNA:   3'- -GGGCUUUgcCCuACGcGCUGGCGCgG- -5'
26417 5' -58.1 NC_005345.2 + 45134 0.68 0.476418
Target:  5'- --aGggGCGGGAcaacgcggacgcgcUGCGgcucgucCGACCGgGCCu -3'
miRNA:   3'- gggCuuUGCCCU--------------ACGC-------GCUGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 44859 0.72 0.252023
Target:  5'- cUCCGAGGCGccccGCgGCGGCCGCGUCg -3'
miRNA:   3'- -GGGCUUUGCccuaCG-CGCUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 44806 0.67 0.500302
Target:  5'- gCCCGAGGCaGGAccccgGCuCGGCCGaUGUCg -3'
miRNA:   3'- -GGGCUUUGcCCUa----CGcGCUGGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.