miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 3' -53.5 NC_005345.2 + 44380 0.66 0.832864
Target:  5'- aCGggUCGCcGGCGa----GGGUGCCg -3'
miRNA:   3'- gGCuuAGUGaCCGCcgcagCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 10067 0.66 0.832864
Target:  5'- gCCGAcGUCGC-GGCGaGCGUCcacucGAUcGCCg -3'
miRNA:   3'- -GGCU-UAGUGaCCGC-CGCAGc----CUA-UGG- -5'
26420 3' -53.5 NC_005345.2 + 28606 0.66 0.832864
Target:  5'- aCCGAAUCGCgcaugccgGGCG-UGUCGccgcagGCCg -3'
miRNA:   3'- -GGCUUAGUGa-------CCGCcGCAGCcua---UGG- -5'
26420 3' -53.5 NC_005345.2 + 37157 0.66 0.832864
Target:  5'- gCGAagaugAUCACggaagGGuCGGgGUCGGAcauCCg -3'
miRNA:   3'- gGCU-----UAGUGa----CC-GCCgCAGCCUau-GG- -5'
26420 3' -53.5 NC_005345.2 + 42057 0.66 0.823797
Target:  5'- cCCGAGUUACcGGCuGC-UCGGcgACa -3'
miRNA:   3'- -GGCUUAGUGaCCGcCGcAGCCuaUGg -5'
26420 3' -53.5 NC_005345.2 + 8614 0.66 0.823797
Target:  5'- cUCGGcgAUCACgaacguuccGGCGGCGUCGcaGUACa -3'
miRNA:   3'- -GGCU--UAGUGa--------CCGCCGCAGCc-UAUGg -5'
26420 3' -53.5 NC_005345.2 + 37716 0.66 0.823797
Target:  5'- gCgGGAUCGCgcuGCGGCG-CGGc-GCCg -3'
miRNA:   3'- -GgCUUAGUGac-CGCCGCaGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 19410 0.66 0.823797
Target:  5'- gCCGAgcucgGUCgGCUGcGCcGCGUCGGucgcACCg -3'
miRNA:   3'- -GGCU-----UAG-UGAC-CGcCGCAGCCua--UGG- -5'
26420 3' -53.5 NC_005345.2 + 629 0.66 0.82196
Target:  5'- gCGGAUCGCguccucggccuGCGGCGUgagCGGG-ACCg -3'
miRNA:   3'- gGCUUAGUGac---------CGCCGCA---GCCUaUGG- -5'
26420 3' -53.5 NC_005345.2 + 18232 0.66 0.814528
Target:  5'- gCGGGcCGCcGGCGGuCGUCaccGGGUugCa -3'
miRNA:   3'- gGCUUaGUGaCCGCC-GCAG---CCUAugG- -5'
26420 3' -53.5 NC_005345.2 + 7336 0.66 0.814528
Target:  5'- gCCGAGUCGCacGCGGUGUggcccgCGGuggcgcaGCCg -3'
miRNA:   3'- -GGCUUAGUGacCGCCGCA------GCCua-----UGG- -5'
26420 3' -53.5 NC_005345.2 + 6943 0.66 0.814528
Target:  5'- cCCGGucGUCA-UGGUGGUGcCGGcgAUCg -3'
miRNA:   3'- -GGCU--UAGUgACCGCCGCaGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 8920 0.66 0.805067
Target:  5'- gCCaGGAUCACggcGGCcgcccccgugGGCGggcugCGGGUGCUc -3'
miRNA:   3'- -GG-CUUAGUGa--CCG----------CCGCa----GCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 22311 0.66 0.805067
Target:  5'- cCCG---CGCUcGGC-GCGcCGGGUGCCg -3'
miRNA:   3'- -GGCuuaGUGA-CCGcCGCaGCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 5253 0.66 0.799302
Target:  5'- aCGGugggcGUgACgGGCGGCagggcgggcucggggGUCGGGUACUg -3'
miRNA:   3'- gGCU-----UAgUGaCCGCCG---------------CAGCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 6363 0.66 0.795424
Target:  5'- gCCGggUuggcCGC-GGUGGCGUUGcGGUcCCa -3'
miRNA:   3'- -GGCuuA----GUGaCCGCCGCAGC-CUAuGG- -5'
26420 3' -53.5 NC_005345.2 + 2719 0.66 0.79445
Target:  5'- uUCGAagAUCACUGgacGCGGCGagacggCGGucgacaaGUGCCg -3'
miRNA:   3'- -GGCU--UAGUGAC---CGCCGCa-----GCC-------UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 40424 0.67 0.785609
Target:  5'- aCGGAUCGCcGcCGGCGaCGGAcgagucgGCCa -3'
miRNA:   3'- gGCUUAGUGaCcGCCGCaGCCUa------UGG- -5'
26420 3' -53.5 NC_005345.2 + 16061 0.67 0.775635
Target:  5'- uCCGggUC-CgGGCGGUGcgUGGcagcUGCCg -3'
miRNA:   3'- -GGCuuAGuGaCCGCCGCa-GCCu---AUGG- -5'
26420 3' -53.5 NC_005345.2 + 3455 0.67 0.775635
Target:  5'- cCCGAGcUCGCgcgGGC--UGUCGGAcaUGCCu -3'
miRNA:   3'- -GGCUU-AGUGa--CCGccGCAGCCU--AUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.