miRNA display CGI


Results 1 - 20 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 12847 0.66 0.391921
Target:  5'- cCGGCgaggACCGgugacgucgugggggUGGCuCGCCGCCGGguGg -3'
miRNA:   3'- aGUCG----UGGU---------------GCUG-GCGGCGGCCguCg -5'
26420 5' -61.6 NC_005345.2 + 7840 0.66 0.388433
Target:  5'- -gGGCGuCCAgCcGCCGgCGCCGGCAccgagGCg -3'
miRNA:   3'- agUCGU-GGU-GcUGGCgGCGGCCGU-----CG- -5'
26420 5' -61.6 NC_005345.2 + 17935 0.66 0.388433
Target:  5'- ---aCACC-CGGCCGCaC-CCGGguGCg -3'
miRNA:   3'- agucGUGGuGCUGGCG-GcGGCCguCG- -5'
26420 5' -61.6 NC_005345.2 + 33873 0.66 0.388433
Target:  5'- uUCGGCGuCgACGugggggaCGCCGCUcgcgcggccgGGCAGCu -3'
miRNA:   3'- -AGUCGU-GgUGCug-----GCGGCGG----------CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 27573 0.66 0.388433
Target:  5'- cCGGCGgC-CGGgCGCCGgauuaCCGGCAGg -3'
miRNA:   3'- aGUCGUgGuGCUgGCGGC-----GGCCGUCg -5'
26420 5' -61.6 NC_005345.2 + 11628 0.66 0.388433
Target:  5'- aCAGCccGCCGagcaGGCauagaCGCCuGCaCGGCGGCg -3'
miRNA:   3'- aGUCG--UGGUg---CUG-----GCGG-CG-GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 7656 0.66 0.388433
Target:  5'- gCGGCAgaGCGGCCGCUGUgaagGGgAGCc -3'
miRNA:   3'- aGUCGUggUGCUGGCGGCGg---CCgUCG- -5'
26420 5' -61.6 NC_005345.2 + 26306 0.66 0.388433
Target:  5'- cCGGCgACCgggAUGACCGUCGUCGauCAGCc -3'
miRNA:   3'- aGUCG-UGG---UGCUGGCGGCGGCc-GUCG- -5'
26420 5' -61.6 NC_005345.2 + 26766 0.66 0.387564
Target:  5'- aCAGCucgACCGagccggaacCGACCGCaauacguCGCCcgugcGGCAGCg -3'
miRNA:   3'- aGUCG---UGGU---------GCUGGCG-------GCGG-----CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 30913 0.66 0.387564
Target:  5'- gCAGCACCGgGACCagggcgaGCCcgacCCGaacGCGGCg -3'
miRNA:   3'- aGUCGUGGUgCUGG-------CGGc---GGC---CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 32777 0.66 0.379803
Target:  5'- gCGGCGCagaGCGGCgaCGCCGC-GGCGauGCu -3'
miRNA:   3'- aGUCGUGg--UGCUG--GCGGCGgCCGU--CG- -5'
26420 5' -61.6 NC_005345.2 + 28818 0.66 0.379803
Target:  5'- gUCcGCACCGCGcGCCuGCCcaucGCCGuggacGCGGCc -3'
miRNA:   3'- -AGuCGUGGUGC-UGG-CGG----CGGC-----CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 264 0.66 0.379803
Target:  5'- --cGCACCuuCG-CCGCCacGUCGGcCGGCg -3'
miRNA:   3'- aguCGUGGu-GCuGGCGG--CGGCC-GUCG- -5'
26420 5' -61.6 NC_005345.2 + 33704 0.66 0.379803
Target:  5'- gCGGC-UCGgGGCCGUCGCgGGCgaGGUg -3'
miRNA:   3'- aGUCGuGGUgCUGGCGGCGgCCG--UCG- -5'
26420 5' -61.6 NC_005345.2 + 46450 0.66 0.379803
Target:  5'- aUCGGCGCCGcCGACacccacauCGacaaCGCCcGCGGCc -3'
miRNA:   3'- -AGUCGUGGU-GCUG--------GCg---GCGGcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 17824 0.66 0.379803
Target:  5'- cCGGCgugccccuucccGCC-CGGCCGCCGggccCCGGCGa- -3'
miRNA:   3'- aGUCG------------UGGuGCUGGCGGC----GGCCGUcg -5'
26420 5' -61.6 NC_005345.2 + 5443 0.66 0.379803
Target:  5'- gCGGCGCC-CGGguCgGCCGUaggGGCGGUg -3'
miRNA:   3'- aGUCGUGGuGCU--GgCGGCGg--CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 6283 0.66 0.379803
Target:  5'- aCAGCACgugCGgGGCCGCCuucaucccgGCCGGguucCGGCc -3'
miRNA:   3'- aGUCGUG---GUgCUGGCGG---------CGGCC----GUCG- -5'
26420 5' -61.6 NC_005345.2 + 2008 0.66 0.379803
Target:  5'- aCAGCGCCcccuCGcuCCGCUgcuccgggGCCGGCcuGCa -3'
miRNA:   3'- aGUCGUGGu---GCu-GGCGG--------CGGCCGu-CG- -5'
26420 5' -61.6 NC_005345.2 + 42169 0.66 0.379803
Target:  5'- aCAGCgGCCcCGAaagCGCCuGCC-GCAGCg -3'
miRNA:   3'- aGUCG-UGGuGCUg--GCGG-CGGcCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.