miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 48593 0.71 0.233222
Target:  5'- gCGGCGGgC-GAGgacccacGCCGGCUGUUCGg -3'
miRNA:   3'- -GCCGUCgGgCUCaa-----UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 48221 0.67 0.394601
Target:  5'- cCGGCGGCCgaccuggacauuggCGAGgcGCCGGCgaaGCa-- -3'
miRNA:   3'- -GCCGUCGG--------------GCUCaaUGGCCGa--CGagc -5'
26421 3' -59.5 NC_005345.2 + 47946 0.68 0.362533
Target:  5'- gCGGCguGGCCCGcgg-GCCGGaCUGC-CGa -3'
miRNA:   3'- -GCCG--UCGGGCucaaUGGCC-GACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 46074 0.69 0.285228
Target:  5'- aGGCGGCCgGGGccGCCGGggcCUGCgCGg -3'
miRNA:   3'- gCCGUCGGgCUCaaUGGCC---GACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 45198 0.66 0.482768
Target:  5'- -uGCcGCCCGAGaggcUGCCGGCcGCggCGa -3'
miRNA:   3'- gcCGuCGGGCUCa---AUGGCCGaCGa-GC- -5'
26421 3' -59.5 NC_005345.2 + 44869 0.7 0.264722
Target:  5'- -cGCAGCCCGAGc--CCGaGCUGCcCGc -3'
miRNA:   3'- gcCGUCGGGCUCaauGGC-CGACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 43414 0.66 0.443606
Target:  5'- uCGGCugcGGCCCGGaacacgGCCGGCcugGCgUCGa -3'
miRNA:   3'- -GCCG---UCGGGCUcaa---UGGCCGa--CG-AGC- -5'
26421 3' -59.5 NC_005345.2 + 43095 0.69 0.306968
Target:  5'- uCGGgAGCCCGccguagcgcGGUgagcUGCaguGGCUGCUCGu -3'
miRNA:   3'- -GCCgUCGGGC---------UCA----AUGg--CCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 42754 0.68 0.371019
Target:  5'- cCGGCA-CCCGgcGGUUGCCGG--GCUUGg -3'
miRNA:   3'- -GCCGUcGGGC--UCAAUGGCCgaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 42431 0.68 0.329953
Target:  5'- gGGCuuGCacaCCGuGcccGCCGGCUGCUCGu -3'
miRNA:   3'- gCCGu-CG---GGCuCaa-UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 42050 1.09 0.000321
Target:  5'- cCGGCAGCCCGAGUUACCGGCUGCUCGg -3'
miRNA:   3'- -GCCGUCGGGCUCAAUGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 41436 0.69 0.292337
Target:  5'- gCGGCAGCUCG---UACCGGCgGCacUCGc -3'
miRNA:   3'- -GCCGUCGGGCucaAUGGCCGaCG--AGC- -5'
26421 3' -59.5 NC_005345.2 + 41072 0.68 0.354182
Target:  5'- -uGCAGCCCG----GCCGcCUGCUCGg -3'
miRNA:   3'- gcCGUCGGGCucaaUGGCcGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 40177 0.66 0.482768
Target:  5'- gCGcGCAGCUgcggauCGAG--GCCGGCgugcaGCUCGg -3'
miRNA:   3'- -GC-CGUCGG------GCUCaaUGGCCGa----CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 39511 0.73 0.157206
Target:  5'- cCGGguGCCCGAGUggacCCGGCcGaUCGa -3'
miRNA:   3'- -GCCguCGGGCUCAau--GGCCGaCgAGC- -5'
26421 3' -59.5 NC_005345.2 + 39456 0.72 0.19448
Target:  5'- gCGGCGGCCCGcugaucGGccugcaGCCGGCggcGCUCGc -3'
miRNA:   3'- -GCCGUCGGGC------UCaa----UGGCCGa--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 38508 0.67 0.37964
Target:  5'- -cGCGGuCCCuGAGUcACgCGuGCUGCUCGa -3'
miRNA:   3'- gcCGUC-GGG-CUCAaUG-GC-CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 38379 0.67 0.37964
Target:  5'- gCGGCuGUCuCGAcg-GCCGGCagggGCUCGg -3'
miRNA:   3'- -GCCGuCGG-GCUcaaUGGCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 38300 0.66 0.441695
Target:  5'- gCGGCAGUCCGcccaccgcaGCuCGGCgccgGCUCGu -3'
miRNA:   3'- -GCCGUCGGGCucaa-----UG-GCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 37953 0.67 0.376176
Target:  5'- aCGGU-GCCCGAGcggaucgggauCCGGUgGCUCGa -3'
miRNA:   3'- -GCCGuCGGGCUCaau--------GGCCGaCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.