miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 3955 0.68 0.345968
Target:  5'- cCGGCAGCCucuCGGGcggcaUACuCGGCUGCg-- -3'
miRNA:   3'- -GCCGUCGG---GCUCa----AUG-GCCGACGagc -5'
26421 3' -59.5 NC_005345.2 + 38508 0.67 0.37964
Target:  5'- -cGCGGuCCCuGAGUcACgCGuGCUGCUCGa -3'
miRNA:   3'- gcCGUC-GGG-CUCAaUG-GC-CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 38379 0.67 0.37964
Target:  5'- gCGGCuGUCuCGAcg-GCCGGCagggGCUCGg -3'
miRNA:   3'- -GCCGuCGG-GCUcaaUGGCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 29151 0.67 0.37704
Target:  5'- cCGGCAGCCCGccuGUcGCCcucGGCgaaccgggucggcaUGCUCu -3'
miRNA:   3'- -GCCGUCGGGCu--CAaUGG---CCG--------------ACGAGc -5'
26421 3' -59.5 NC_005345.2 + 42754 0.68 0.371019
Target:  5'- cCGGCA-CCCGgcGGUUGCCGG--GCUUGg -3'
miRNA:   3'- -GCCGUcGGGC--UCAAUGGCCgaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 5164 0.68 0.371019
Target:  5'- gCGGCGGCCgacgagucgggCGAGccGCCGGgCUGCacgcaUCGg -3'
miRNA:   3'- -GCCGUCGG-----------GCUCaaUGGCC-GACG-----AGC- -5'
26421 3' -59.5 NC_005345.2 + 19323 0.68 0.362533
Target:  5'- -cGUGGCCgCGAcGaUGCCgGGCUGCUCGc -3'
miRNA:   3'- gcCGUCGG-GCU-CaAUGG-CCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 41072 0.68 0.354182
Target:  5'- -uGCAGCCCG----GCCGcCUGCUCGg -3'
miRNA:   3'- gcCGUCGGGCucaaUGGCcGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 27162 0.68 0.354182
Target:  5'- gCGGCagcGGCCCGAGcagUACCGG--GCaUCGg -3'
miRNA:   3'- -GCCG---UCGGGCUCa--AUGGCCgaCG-AGC- -5'
26421 3' -59.5 NC_005345.2 + 25779 0.67 0.388395
Target:  5'- gGGCAGCUCGGGcgccUCGGCccGCUCc -3'
miRNA:   3'- gCCGUCGGGCUCaau-GGCCGa-CGAGc -5'
26421 3' -59.5 NC_005345.2 + 48221 0.67 0.394601
Target:  5'- cCGGCGGCCgaccuggacauuggCGAGgcGCCGGCgaaGCa-- -3'
miRNA:   3'- -GCCGUCGG--------------GCUCaaUGGCCGa--CGagc -5'
26421 3' -59.5 NC_005345.2 + 4466 0.67 0.39728
Target:  5'- gCGGgGGCCCGGcg-GCCGuGUccgGCUCGa -3'
miRNA:   3'- -GCCgUCGGGCUcaaUGGC-CGa--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 36885 0.66 0.46297
Target:  5'- uCGGCguacGGUCCGAacgaGCCGGgcCUGCUCGc -3'
miRNA:   3'- -GCCG----UCGGGCUcaa-UGGCC--GACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 32996 0.66 0.461013
Target:  5'- aGGCGGCCgGGGUgGCgggGGCgucgacgaucggGCUCGg -3'
miRNA:   3'- gCCGUCGGgCUCAaUGg--CCGa-----------CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 34247 0.66 0.453232
Target:  5'- -cGCGGCCCGcuUcGCCcGCUGCUCc -3'
miRNA:   3'- gcCGUCGGGCucAaUGGcCGACGAGc -5'
26421 3' -59.5 NC_005345.2 + 8608 0.66 0.453232
Target:  5'- gGGCAGCUCGGcgaucacgaacGUU-CCGGCgGCgUCGc -3'
miRNA:   3'- gCCGUCGGGCU-----------CAAuGGCCGaCG-AGC- -5'
26421 3' -59.5 NC_005345.2 + 4340 0.66 0.443606
Target:  5'- uCGGCcgAGCCgGGGUccUGCCucgggcgggcgGGCcGCUCGg -3'
miRNA:   3'- -GCCG--UCGGgCUCA--AUGG-----------CCGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 38300 0.66 0.441695
Target:  5'- gCGGCAGUCCGcccaccgcaGCuCGGCgccgGCUCGu -3'
miRNA:   3'- -GCCGUCGGGCucaa-----UG-GCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 2548 0.67 0.424706
Target:  5'- gCGGUGGCgacggCGAGUgcCCGGUcgacgUGCUCGg -3'
miRNA:   3'- -GCCGUCGg----GCUCAauGGCCG-----ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 22015 0.67 0.39728
Target:  5'- gGGCAGCUCGAc--GCCGGCcggUGC-CGc -3'
miRNA:   3'- gCCGUCGGGCUcaaUGGCCG---ACGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.