miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 3' -53.2 NC_005345.2 + 30971 0.66 0.80316
Target:  5'- uCGCCGACGGUGUaCGCCcACAc----- -3'
miRNA:   3'- -GUGGCUGCCGUA-GCGGaUGUucuagu -5'
26422 3' -53.2 NC_005345.2 + 8003 0.66 0.80316
Target:  5'- aACCGGCGGCcgCGgUUucACGAGcUCGa -3'
miRNA:   3'- gUGGCUGCCGuaGCgGA--UGUUCuAGU- -5'
26422 3' -53.2 NC_005345.2 + 41849 0.66 0.80316
Target:  5'- gCACCG-CGGC-UCGuCCUGCGGuucgccucggcGAUCGc -3'
miRNA:   3'- -GUGGCuGCCGuAGC-GGAUGUU-----------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 11855 0.66 0.80316
Target:  5'- aCGgCGugGGCAUCGgcCCUGCAcGAc-- -3'
miRNA:   3'- -GUgGCugCCGUAGC--GGAUGUuCUagu -5'
26422 3' -53.2 NC_005345.2 + 11633 0.66 0.80316
Target:  5'- cCGCCGAgcaGGCAUagaCGCCUGCAcGG-CGg -3'
miRNA:   3'- -GUGGCUg--CCGUA---GCGGAUGUuCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 20398 0.66 0.80316
Target:  5'- gACCG-CGGg--CGCCUGCAGGGcCGa -3'
miRNA:   3'- gUGGCuGCCguaGCGGAUGUUCUaGU- -5'
26422 3' -53.2 NC_005345.2 + 4766 0.66 0.797239
Target:  5'- -cUCGACGGCAcccUCGCCgGCGAcccguucgaggugacGAUCGc -3'
miRNA:   3'- guGGCUGCCGU---AGCGGaUGUU---------------CUAGU- -5'
26422 3' -53.2 NC_005345.2 + 41142 0.66 0.793255
Target:  5'- gACUGGCGGC-UCGCCacugUGCAGaccGUCAa -3'
miRNA:   3'- gUGGCUGCCGuAGCGG----AUGUUc--UAGU- -5'
26422 3' -53.2 NC_005345.2 + 16369 0.66 0.793255
Target:  5'- uCGCCG-CGGCGUCGCCgcucUGCGccgccaccaugaGGggCAu -3'
miRNA:   3'- -GUGGCuGCCGUAGCGG----AUGU------------UCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 23056 0.66 0.783174
Target:  5'- aCACC--CGGUA-CGCCUGC-GGAUCGa -3'
miRNA:   3'- -GUGGcuGCCGUaGCGGAUGuUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 31653 0.66 0.777046
Target:  5'- gACCGGCGGCccgcaguuccuucccGaCGCCgagACAGGcgCAg -3'
miRNA:   3'- gUGGCUGCCG---------------UaGCGGa--UGUUCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 5433 0.66 0.772929
Target:  5'- --aCGACGGCGuUCGUau-CGAGGUCGa -3'
miRNA:   3'- gugGCUGCCGU-AGCGgauGUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 6616 0.66 0.771895
Target:  5'- gACCGGCGGCGguugCGCCcgGCGgugcgacGGcGUCAc -3'
miRNA:   3'- gUGGCUGCCGUa---GCGGa-UGU-------UC-UAGU- -5'
26422 3' -53.2 NC_005345.2 + 19805 0.66 0.76253
Target:  5'- aCGCCGACGGCGacgagCGCUgACAcccGGggCGg -3'
miRNA:   3'- -GUGGCUGCCGUa----GCGGaUGU---UCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 8174 0.66 0.76253
Target:  5'- cCGCCGACGccgaggucgaucGCGaaagacgcCGCCUGCAcgAGAUCGg -3'
miRNA:   3'- -GUGGCUGC------------CGUa-------GCGGAUGU--UCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 14350 0.66 0.761482
Target:  5'- uCGCCGucaucACGGCGUUGagcagccCCUGCAcGAUCGc -3'
miRNA:   3'- -GUGGC-----UGCCGUAGC-------GGAUGUuCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 10516 0.66 0.760433
Target:  5'- gGCagGACGGgAUCGCCgaggccgacguCGAGAUCGc -3'
miRNA:   3'- gUGg-CUGCCgUAGCGGau---------GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 30366 0.67 0.751991
Target:  5'- -cCCGACGGCAgccCGCg-GCGGGcgCAg -3'
miRNA:   3'- guGGCUGCCGUa--GCGgaUGUUCuaGU- -5'
26422 3' -53.2 NC_005345.2 + 30136 0.67 0.751991
Target:  5'- -cCCGAgGGCGgcgCGCCacccguCGAGGUCGu -3'
miRNA:   3'- guGGCUgCCGUa--GCGGau----GUUCUAGU- -5'
26422 3' -53.2 NC_005345.2 + 2801 0.67 0.741324
Target:  5'- gCGCCGGCGuGCGcucgaUCGCCUGCuccAGcgCc -3'
miRNA:   3'- -GUGGCUGC-CGU-----AGCGGAUGu--UCuaGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.