miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 3' -56.1 NC_005345.2 + 45821 0.66 0.684769
Target:  5'- cGUCgCgaccguGACGugCACGGCGGCg -3'
miRNA:   3'- aCAGgGacuc--UUGCugGUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 43781 0.66 0.684769
Target:  5'- cUGUUCCggcuccugGAGAucgccgggcagcGCGcCCACGGC-ACCg -3'
miRNA:   3'- -ACAGGGa-------CUCU------------UGCuGGUGCCGcUGG- -5'
26424 3' -56.1 NC_005345.2 + 27172 0.66 0.684769
Target:  5'- cGUCCCgccgGAGGAgGuCUACcGcCGGCCg -3'
miRNA:   3'- aCAGGGa---CUCUUgCuGGUGcC-GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 32762 0.66 0.684769
Target:  5'- aUGcCCCUcaugguggcggcGcAGAGCGgcgacGCCGCGGCGAUg -3'
miRNA:   3'- -ACaGGGA------------C-UCUUGC-----UGGUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 5408 0.66 0.684769
Target:  5'- gGUCgCaacGAGcgUGACgGCGGCGACg -3'
miRNA:   3'- aCAGgGa--CUCuuGCUGgUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 21953 0.66 0.684769
Target:  5'- cGUCacguCUGcacGAACGGCCGgCGGUaGACCu -3'
miRNA:   3'- aCAGg---GACu--CUUGCUGGU-GCCG-CUGG- -5'
26424 3' -56.1 NC_005345.2 + 24493 0.66 0.673945
Target:  5'- gGUCCCgggcccgcGGGAuccugguCGACCAccgcgaggcgccCGGCGACa -3'
miRNA:   3'- aCAGGGa-------CUCUu------GCUGGU------------GCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 45706 0.66 0.673945
Target:  5'- gGUCCCggcgggcgGGGGucuGCGugCGCaGCGuCCa -3'
miRNA:   3'- aCAGGGa-------CUCU---UGCugGUGcCGCuGG- -5'
26424 3' -56.1 NC_005345.2 + 16019 0.66 0.663082
Target:  5'- aGgCCCgcGAGggUGAgacCCGCGGCGAgUa -3'
miRNA:   3'- aCaGGGa-CUCuuGCU---GGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 40223 0.66 0.663082
Target:  5'- cG-CCCacGGGGGCGGCCGCcGUGAUCc -3'
miRNA:   3'- aCaGGGa-CUCUUGCUGGUGcCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 11283 0.66 0.663082
Target:  5'- cGUCcgggCCUGAGccucgcCGGCCGCGacCGACCg -3'
miRNA:   3'- aCAG----GGACUCuu----GCUGGUGCc-GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 15031 0.66 0.663082
Target:  5'- -uUCCUUGAucGCGuCgGCGGCGAUg -3'
miRNA:   3'- acAGGGACUcuUGCuGgUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 19662 0.66 0.65219
Target:  5'- cG-CCUucggcaUGAGGAUGACgCcCGGCGACUg -3'
miRNA:   3'- aCaGGG------ACUCUUGCUG-GuGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 21791 0.66 0.65219
Target:  5'- gGUCggguggaCUGAuu-CGAUgGCGGCGGCCg -3'
miRNA:   3'- aCAGg------GACUcuuGCUGgUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 40863 0.66 0.65219
Target:  5'- cGUgCagGAGGGCGGCCGCuuCGACCg -3'
miRNA:   3'- aCAgGgaCUCUUGCUGGUGccGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 31395 0.66 0.6511
Target:  5'- gGUCCUaggugagggUGAGGGCGAgugcgcaCC-CGGCGAUg -3'
miRNA:   3'- aCAGGG---------ACUCUUGCU-------GGuGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 2750 0.66 0.64128
Target:  5'- cGgCCCgcauguGGAGCGcGCCacgcGCGGCGGCCu -3'
miRNA:   3'- aCaGGGac----UCUUGC-UGG----UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 16706 0.66 0.64128
Target:  5'- cGUCCgUGAugucgagguaGAGCGuGCCGuCGGCcGCCg -3'
miRNA:   3'- aCAGGgACU----------CUUGC-UGGU-GCCGcUGG- -5'
26424 3' -56.1 NC_005345.2 + 591 0.66 0.64128
Target:  5'- gUGaUCgUGGGAGuCGGCCGCcaccgGGUGACCa -3'
miRNA:   3'- -ACaGGgACUCUU-GCUGGUG-----CCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 31325 0.67 0.630362
Target:  5'- gGUCUg-GAGGGCGGCCGgacGUGACCa -3'
miRNA:   3'- aCAGGgaCUCUUGCUGGUgc-CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.