miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 3645 0.66 0.612597
Target:  5'- -cGUCCGCAgcccggCggCAgCGGCCGGGAu -3'
miRNA:   3'- acCGGGCGUaa----GuaGUgGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 16366 0.66 0.612597
Target:  5'- cGGCgCCGCggUgAUCGCgaCGAUCGGGu -3'
miRNA:   3'- aCCG-GGCGuaAgUAGUG--GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 33482 0.66 0.612597
Target:  5'- gGGCCCGgug-UGUCACC-ACCGGGc -3'
miRNA:   3'- aCCGGGCguaaGUAGUGGcUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 11808 0.66 0.610393
Target:  5'- aGGCUCGCuccgagacgggUCAUCGCCGucugCAGGu -3'
miRNA:   3'- aCCGGGCGua---------AGUAGUGGCug--GUCCu -5'
26424 5' -56.7 NC_005345.2 + 34596 0.66 0.601587
Target:  5'- gGGCCCGUg--CcgUACCGgGCgAGGAg -3'
miRNA:   3'- aCCGGGCGuaaGuaGUGGC-UGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 7109 0.66 0.599388
Target:  5'- cGGCCCGCGacguguggCGCCGcgcgaACCGGGc -3'
miRNA:   3'- aCCGGGCGUaagua---GUGGC-----UGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30072 0.66 0.598289
Target:  5'- cGGCCCGCAcgaucgCGUagACCccguaggcgaccacGGCCAGGGc -3'
miRNA:   3'- aCCGGGCGUaa----GUAg-UGG--------------CUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 776 0.66 0.58403
Target:  5'- cGGCCgGCGgcgggggauGCCGACCGGGc -3'
miRNA:   3'- aCCGGgCGUaaguag---UGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 47104 0.66 0.579656
Target:  5'- cGGCCCGCcgggCcgCGCCgGGCCcgcucgacgAGGAc -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGG-CUGG---------UCCU- -5'
26424 5' -56.7 NC_005345.2 + 5624 0.66 0.579656
Target:  5'- gUGGCCgaCGCggUgAUCGCCGACCc-GAu -3'
miRNA:   3'- -ACCGG--GCGuaAgUAGUGGCUGGucCU- -5'
26424 5' -56.7 NC_005345.2 + 10646 0.66 0.576379
Target:  5'- gGGCUCGCcaUgGUCgcccgggucggcgaGCCGAUCAGGGu -3'
miRNA:   3'- aCCGGGCGuaAgUAG--------------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 23766 0.66 0.568751
Target:  5'- aGGCCgGCGgcgaucgCGUCgaGCCGgcacugccacGCCAGGAc -3'
miRNA:   3'- aCCGGgCGUaa-----GUAG--UGGC----------UGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 37016 0.66 0.568751
Target:  5'- cGGCaugCCGCcuUUCAgcggCACCGggcgaGCCGGGAu -3'
miRNA:   3'- aCCG---GGCGu-AAGUa---GUGGC-----UGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 17877 0.66 0.568751
Target:  5'- gGGUCCGCcgUggcguaGUCGCCGAUCAcGGc -3'
miRNA:   3'- aCCGGGCGuaAg-----UAGUGGCUGGU-CCu -5'
26424 5' -56.7 NC_005345.2 + 37773 0.66 0.568751
Target:  5'- -cGCCCGCAggCggC-CgCGACCGGGGc -3'
miRNA:   3'- acCGGGCGUaaGuaGuG-GCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 6278 0.66 0.568751
Target:  5'- gGGCgCCGgg--CGUCACCGACCgaaAGGc -3'
miRNA:   3'- aCCG-GGCguaaGUAGUGGCUGG---UCCu -5'
26424 5' -56.7 NC_005345.2 + 25201 0.67 0.557899
Target:  5'- -aGCCCGCGgugaaUCAccCGCCGGCCGGu- -3'
miRNA:   3'- acCGGGCGUa----AGUa-GUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 45314 0.67 0.557899
Target:  5'- gGGUCCGCA--CGcCGCCGACCucgcagcGGAc -3'
miRNA:   3'- aCCGGGCGUaaGUaGUGGCUGGu------CCU- -5'
26424 5' -56.7 NC_005345.2 + 19743 0.67 0.547105
Target:  5'- cGGCgUCGCugucgCGUgCACCGACCAGa- -3'
miRNA:   3'- aCCG-GGCGuaa--GUA-GUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 19277 0.67 0.547105
Target:  5'- cGGCggCCGCGUgCGUCcacaGCCGgACCGGGu -3'
miRNA:   3'- aCCG--GGCGUAaGUAG----UGGC-UGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.