miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 34759 0.68 0.691439
Target:  5'- cGUGCaGCCgGAUCGGCAccggccgGUCGCCGa -3'
miRNA:   3'- -CGUGcUGGaCUAGCUGUag-----CAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 20603 0.67 0.744863
Target:  5'- uGCGCGgaGCC-GAgccaCGACugAUCGUCGCCc -3'
miRNA:   3'- -CGUGC--UGGaCUa---GCUG--UAGCAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 25077 0.67 0.744863
Target:  5'- cCACGGCCggccGAUCGGC----UCGCCGu -3'
miRNA:   3'- cGUGCUGGa---CUAGCUGuagcAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 3892 0.67 0.744863
Target:  5'- aGCGCGGCgaGGgcggggCgGACGUCGUCGUa- -3'
miRNA:   3'- -CGUGCUGgaCUa-----G-CUGUAGCAGCGgc -5'
26428 5' -53.9 NC_005345.2 + 10318 0.67 0.734361
Target:  5'- gGCA-GAgCgGAUcacCGAUGUCGUCGCCGu -3'
miRNA:   3'- -CGUgCUgGaCUA---GCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 29491 0.67 0.734361
Target:  5'- aGCucguCGGCgCUGAacacgUCGGCAuucgucaugUCGUCGUCGg -3'
miRNA:   3'- -CGu---GCUG-GACU-----AGCUGU---------AGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 35391 0.67 0.71306
Target:  5'- cGCAcCGAgCUcGAucagugccUCGAUGUCGUCGUCGu -3'
miRNA:   3'- -CGU-GCUgGA-CU--------AGCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 48226 0.68 0.702284
Target:  5'- gGC-CGACCUGGacaUUGGCGagG-CGCCGg -3'
miRNA:   3'- -CGuGCUGGACU---AGCUGUagCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 30145 0.68 0.691439
Target:  5'- gGCGCGccACCc-GUCGAgGUCGUccCGCCGg -3'
miRNA:   3'- -CGUGC--UGGacUAGCUgUAGCA--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 8970 0.67 0.75525
Target:  5'- cGC-CGGCCUcGAUCG-CAgcugCG-CGCCGu -3'
miRNA:   3'- -CGuGCUGGA-CUAGCuGUa---GCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 18996 0.66 0.764491
Target:  5'- aGCcuCGGCCcGAgcggggcggcgccUCGACGUCGcCGCCc -3'
miRNA:   3'- -CGu-GCUGGaCU-------------AGCUGUAGCaGCGGc -5'
26428 5' -53.9 NC_005345.2 + 37444 0.66 0.775635
Target:  5'- -gGCGGCCcgcUGGUCGGcCGUCGaucCGCCu -3'
miRNA:   3'- cgUGCUGG---ACUAGCU-GUAGCa--GCGGc -5'
26428 5' -53.9 NC_005345.2 + 5772 0.66 0.814528
Target:  5'- -gGCGGuCCgcaGGUCGGCGUacgCGUCGaCCGg -3'
miRNA:   3'- cgUGCU-GGa--CUAGCUGUA---GCAGC-GGC- -5'
26428 5' -53.9 NC_005345.2 + 24545 0.66 0.805067
Target:  5'- aGCACGcACCcgucgggaUGAUCG-CugcUGUCGCCGu -3'
miRNA:   3'- -CGUGC-UGG--------ACUAGCuGua-GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 27020 0.66 0.805067
Target:  5'- aGCGCGACCacGUCGACgaGUCugugcugcUCGCCa -3'
miRNA:   3'- -CGUGCUGGacUAGCUG--UAGc-------AGCGGc -5'
26428 5' -53.9 NC_005345.2 + 48762 0.66 0.795424
Target:  5'- uGCACGACCU--UCGccACGUguUCGCCa -3'
miRNA:   3'- -CGUGCUGGAcuAGC--UGUAgcAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 29941 0.66 0.785609
Target:  5'- -gAgGACCgGcUCGACGUCGggGCCGu -3'
miRNA:   3'- cgUgCUGGaCuAGCUGUAGCagCGGC- -5'
26428 5' -53.9 NC_005345.2 + 38577 0.66 0.785609
Target:  5'- cGUACucguCCUcGGUCGGCAUCGUggcgagCGCCu -3'
miRNA:   3'- -CGUGcu--GGA-CUAGCUGUAGCA------GCGGc -5'
26428 5' -53.9 NC_005345.2 + 35553 0.66 0.784619
Target:  5'- gGCACcGCCggcgGGUCGAgccacacgaucuuCGUCG-CGCCGc -3'
miRNA:   3'- -CGUGcUGGa---CUAGCU-------------GUAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 6416 0.66 0.775635
Target:  5'- cGCGgGcccGCCgucGGUCGGCgaGUgGUCGCCGa -3'
miRNA:   3'- -CGUgC---UGGa--CUAGCUG--UAgCAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.