miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26430 5' -58.4 NC_005345.2 + 33884 0.66 0.507542
Target:  5'- cGUGGGgGAcGCcgcucGCGCGGcCGGGCa- -3'
miRNA:   3'- aCACCCgCUaCGu----CGUGUC-GCCUGca -5'
26430 5' -58.4 NC_005345.2 + 22115 0.66 0.507542
Target:  5'- gGU-GGCGA-GCAGCACAGacucgucGACGUg -3'
miRNA:   3'- aCAcCCGCUaCGUCGUGUCgc-----CUGCA- -5'
26430 5' -58.4 NC_005345.2 + 30517 0.66 0.507542
Target:  5'- --cGGGCGG-GUAccgGCAGCGGACGa -3'
miRNA:   3'- acaCCCGCUaCGUcg-UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 14828 0.66 0.507542
Target:  5'- gUGUGGuCGAcgcccgaGCAGCuugccgggcuGCAGCGGGCGc -3'
miRNA:   3'- -ACACCcGCUa------CGUCG----------UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 40871 0.66 0.497176
Target:  5'- --aGGGCGGccGCuucgaccgGGCACAugcuGCGGACGUu -3'
miRNA:   3'- acaCCCGCUa-CG--------UCGUGU----CGCCUGCA- -5'
26430 5' -58.4 NC_005345.2 + 45863 0.66 0.487929
Target:  5'- cGUGGGggcggggagccCGAcGCcgucgaucacggucuGCACGGCGGACGg -3'
miRNA:   3'- aCACCC-----------GCUaCGu--------------CGUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 38197 0.66 0.486906
Target:  5'- --cGGGCGuaggGCGGCGgCGGgaaCGGACGg -3'
miRNA:   3'- acaCCCGCua--CGUCGU-GUC---GCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 43449 0.66 0.486906
Target:  5'- uUGUGgcgagggacggcGGCGAguucGCGGCGCAGCGcGGuCGg -3'
miRNA:   3'- -ACAC------------CCGCUa---CGUCGUGUCGC-CU-GCa -5'
26430 5' -58.4 NC_005345.2 + 34411 0.66 0.476738
Target:  5'- gGUGGGCGgcGCcGCGgAcCGGAUGg -3'
miRNA:   3'- aCACCCGCuaCGuCGUgUcGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 22690 0.66 0.476738
Target:  5'- cGU-GGCGGUGaAGCGgGGCGG-CGUg -3'
miRNA:   3'- aCAcCCGCUACgUCGUgUCGCCuGCA- -5'
26430 5' -58.4 NC_005345.2 + 20383 0.66 0.476738
Target:  5'- --cGGGuCGAUGguGUugAccGCGGGCGc -3'
miRNA:   3'- acaCCC-GCUACguCGugU--CGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 34611 0.66 0.476738
Target:  5'- --cGGGCGAggaGcCAGCguGCGGCGGuCGg -3'
miRNA:   3'- acaCCCGCUa--C-GUCG--UGUCGCCuGCa -5'
26430 5' -58.4 NC_005345.2 + 22250 0.66 0.475727
Target:  5'- cGacGGCGAggUGCugccgugGGCGCAGCGGAuCGUc -3'
miRNA:   3'- aCacCCGCU--ACG-------UCGUGUCGCCU-GCA- -5'
26430 5' -58.4 NC_005345.2 + 30891 0.67 0.44689
Target:  5'- --cGGGCGA--CGGCGCGGCcGGCGa -3'
miRNA:   3'- acaCCCGCUacGUCGUGUCGcCUGCa -5'
26430 5' -58.4 NC_005345.2 + 6705 0.67 0.437174
Target:  5'- gGUGGcaCGA-GCAGC-CGGCGGGCa- -3'
miRNA:   3'- aCACCc-GCUaCGUCGuGUCGCCUGca -5'
26430 5' -58.4 NC_005345.2 + 10156 0.67 0.437174
Target:  5'- gGUGGG-GAUG-GGCGCAGaCGcGACGg -3'
miRNA:   3'- aCACCCgCUACgUCGUGUC-GC-CUGCa -5'
26430 5' -58.4 NC_005345.2 + 48558 0.67 0.426627
Target:  5'- aUGcGGGCgucgcgGAUGCGGgcgccgaugagcuCGCGGCGGGCGa -3'
miRNA:   3'- -ACaCCCG------CUACGUC-------------GUGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 6787 0.67 0.424725
Target:  5'- cGUGuGGCGGcUGgAGUcgcacaguugguauGCGGCGGACGc -3'
miRNA:   3'- aCAC-CCGCU-ACgUCG--------------UGUCGCCUGCa -5'
26430 5' -58.4 NC_005345.2 + 36321 0.67 0.408771
Target:  5'- cGccGGUGAUGCGGCGCaggcgaaccGGCGGGCc- -3'
miRNA:   3'- aCacCCGCUACGUCGUG---------UCGCCUGca -5'
26430 5' -58.4 NC_005345.2 + 31192 0.67 0.399563
Target:  5'- --cGGGCGcgGCgGGUGCGGCGGguGCGc -3'
miRNA:   3'- acaCCCGCuaCG-UCGUGUCGCC--UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.